Browse Element(s) Details


Os.57344.1.S1_at

Description gb:AK111338.1
DB_XREF= gi:32996547
TID=Os.57344.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-F05, full insert sequence.
FL= gb:AK111338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1715010/11zinc finger DNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein
LOC_Os03g17150Os.57344.1.S1_at10/113+9503970..9504901zinc finger DNA-binding protein, putative, expressed
LOC_Os03g17160NANA3+9516046..9518940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57344.1.S1_at--647--2671Chr03:9504519..9504543 (25 bp)
AAGCCCAAGGTGCACGGGTGCTCCA
LOC_Os03g17150
Os.57344.1.S1_at--463--10751Chr03:9504227..9504251 (25 bp)
TTGACTTCCCGTGCTGACATTGACA
LOC_Os03g17150
Os.57344.1.S1_at--1115--6511Chr03:9504198..9504222 (25 bp)
GATTTACTTCTCCATACAAGTTTTG
LOC_Os03g17150
Os.57344.1.S1_at--1119--1171Chr03:9504160..9504184 (25 bp)
AGTTTACATTTATACGCTACCCGAG
LOC_Os03g17150
Os.57344.1.S1_at--279--4851Chr03:9504146..9504169 (24 bp)
GCTACCCGAGAAGTCAACCCTGGAG
LOC_Os03g17150
Os.57344.1.S1_at--1048--9691NONE
TCAACCCTGGAGACATTAGCTAGAG
NONE
Os.57344.1.S1_at--86--4871Chr03:9504114..9504138 (25 bp)
GCTAGAGAGATTCCGTCATACATAT
LOC_Os03g17150
Os.57344.1.S1_at--388--6551Chr03:9504064..9504088 (25 bp)
GATTATAATGTTTTCAGGGCCTATA
LOC_Os03g17150
Os.57344.1.S1_at--900--11Chr03:9504033..9504057 (25 bp)
ATTGGTTGACTTATCGTGGTACTTA
LOC_Os03g17150
Os.57344.1.S1_at--909--7451Chr03:9504018..9504042 (25 bp)
GTGGTACTTATAGTCGGTTGTCCTT
LOC_Os03g17150
Os.57344.1.S1_at--213--10651Chr03:9503993..9504017 (25 bp)
TTCCCTTTCGGTGCTACATATTTTA
LOC_Os03g17150
Target Sequence 
AAGCCCAAGGTGCACGGGTGCTCCATCTGCGGGCTCGAGTTCGCCGTCGGCCAGGCGCTCGGAGGGCACATGCGGCGCCA
CCGCGCCGTCATGGCGGACGGCCTCGGGCTTGGCCTCAGCCTCGGCCTCGGCATCGGCGTCGTCGGGCAGAGCGACGACG
ACGGCGGCAAGAAGAAGGCCGCGGCCGCCGCCGCCGCCGCCGAGCTGGTGTTCGACCTGAACGCGCCGGCGATAGAGGAG
GAGCCGGATCGCGCCAGGCCGGCGGGGCTCGCCGTAGAGTTCCCCGTGGTGGTTGACTTCCCGTGCTGACATTGACACAG
AGATTTACTTCTCCATACAAGTTTTGAAAATTAATTTACAGTTTACATTTATACGCTACCCGAGAAGTCAACCCTGGAGA
CATTAGCTAGAGAGATTCCGTCATACATATTTTTTCCCTGGAAATGTATTCGGATGATTATAATGTTTTCAGGGCCTATA
TATTGTATTGGTTGACTTATCGTGGTACTTATAGTCGGTTGTCCTTTTCCCTTTCGGTGCTACATATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis