Browse Element(s) Details


OsAffx.12891.1.S1_at

Description tigr:9631.m01681
TID=OsAffx.12891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1713011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein
LOC_Os03g17150Os.57344.1.S1_at10/113+9503970..9504901zinc finger DNA-binding protein, putative, expressed
LOC_Os03g17160NANA3+9516046..9518940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12891.1.S1_at--497--9891Chr03:9494091..9494228 (25 bp)
TACTTCTGCTGCTCATTTGGTGAGA
LOC_Os03g17130
OsAffx.12891.1.S1_at--537--5731Chr03:9494036..9494060 (25 bp)
GACGGCGGTTTCAGGAGCTCCAAGA
LOC_Os03g17130
OsAffx.12891.1.S1_at--885--2751Chr03:9494006..9494030 (25 bp)
AAGACAGCAACTACGGCGACGACAC
LOC_Os03g17130
OsAffx.12891.1.S1_at--12--5651Chr03:9493755..9493779 (25 bp)
GACAGAATCACAGCTCTGCAGCAGT
LOC_Os03g17130
OsAffx.12891.1.S1_at--180--9491Chr03:9493741..9493765 (25 bp)
TCTGCAGCAGTTAGTTTCACCTTAC
LOC_Os03g17130
OsAffx.12891.1.S1_at--131--6791Chr03:9493735..9493756 (22 bp)
GTTAGTTTCACCTTACGGCAAGACA
LOC_Os03g17130
OsAffx.12891.1.S1_at--900--1931Chr03:9493615..9493742 (25 bp)
ACGGCAAGACAGACACCGCATCGGT
LOC_Os03g17130
OsAffx.12891.1.S1_at--847--8931Chr03:9493252..9493276 (25 bp)
TGACAGCGCCTTACCCTGGAACAAG
LOC_Os03g17130
OsAffx.12891.1.S1_at--41--5071Chr03:9493206..9493230 (25 bp)
GCAGCAGGTCGTATTTTCTGTTCTT
LOC_Os03g17130
OsAffx.12891.1.S1_at--283--5571Chr03:9493181..9493205 (25 bp)
GAAAGTTGCAGCCATGTCATGTCCT
LOC_Os03g17130
OsAffx.12891.1.S1_at--777--5191Chr03:9493148..9493172 (25 bp)
GCAATTGCAACAGTTTTGTGGCTGC
LOC_Os03g17130
Target Sequence 
TACTTCTGCTGCTCATTTGGTGAGATGGACGGCGGCCGGGGAGCCGATGACCGGCGACGGCGGTTTCAGGAGCTCCAAGA
GGCTCAAGACAGCAACTACGGCGACGACACAACCTCCAAGGCATGGGGTGAAGTGCCATGCAAAGCCAAGAAATCAAACT
ACGAAGGCAACATGTAAGAAGAGGAGCCAGAAACTGGGCGACAGAATCACAGCTCTGCAGCAGTTAGTTTCACCTTACGG
CAAGACAGACACCGCATCGGTGCTCCACGAAGCAGCCGCCTGCATACGGCAACTCCACCAACAAATCCAGATTCTGACAG
CGCCTTACCCTGGAACAAGCTCCTCCTCTGCATCGTCGCAGCAGCAGGTCGTATTTTCTGTTCTTGAAAGTTGCAGCCAT
GTCATGTCCTTCTTTACTGCAATTGCAACAGTTTTGTGGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis