Browse Element(s) Details


OsAffx.12890.1.S1_at

Description tigr:9631.m01676
TID=OsAffx.12890.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1708411/11Core histone H2A/H2B/H3/H4 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12890.1.S1_at--296--3391Chr03:9475597..9475621 (25 bp)
CAGAGGCAGTGGAGGTCACGCCCCC
LOC_Os03g17084
OsAffx.12890.1.S1_at--97--8111Chr03:9475712..9475736 (25 bp)
GGACGCGGCAAATCGGCGCAGGCAG
LOC_Os03g17084
OsAffx.12890.1.S1_at--611--1631Chr03:9475735..9475759 (25 bp)
AGCGGACCGCTGTTGCCGACGCATG
LOC_Os03g17084
OsAffx.12890.1.S1_at--119--10711Chr03:9475747..9475771 (25 bp)
TTGCCGACGCATGCCGATGGACGGC
LOC_Os03g17084
OsAffx.12890.1.S1_at--200--4251Chr03:9475841..9475865 (25 bp)
CCGTCGAGCTCCAGACGGCGAAGGA
LOC_Os03g17084
OsAffx.12890.1.S1_at--479--4711Chr03:9475868..9475892 (25 bp)
GCGGCCCAGACCTTGGCGACGACAG
LOC_Os03g17084
OsAffx.12890.1.S1_at--566--2911Chr03:9475965..9475989 (25 bp)
AAGGAGGCGTAGGAGTCCACACGGG
LOC_Os03g17084
OsAffx.12890.1.S1_at--1006--4232Chr03:9476012..9476036 (25 bp)
GCCGGAGAGGGATCCGACCCCTTCT
LOC_Os03g17084
OsAffx.12890.1.S1_at--1011--10711Chr03:9476084..9476108 (25 bp)
TTGCTCCTGCCTCGTCATCGCGGAG
LOC_Os03g17084
OsAffx.12890.1.S1_at--806--531Chr03:9476100..9476124 (25 bp)
ATCGCGGAGCTCTCTTGGTGACGGA
LOC_Os03g17084
OsAffx.12890.1.S1_at--819--1551Chr03:9476107..9476131 (25 bp)
AGCTCTCTTGGTGACGGAGGAAATC
LOC_Os03g17084
Target Sequence 
CAGAGGCAGTGGAGGTCACGCCCCCCACCCTGAATCCGGCGGCGGTGGAGGCGGCGGAGGCGGCGCTAGGGAGTGGCGCG
ACGTTGGGACGACGATGCGGGGAGGCGGCGGACGCGGACGCGGCAAATCGGCGCAGGCAGCGGACCGCTGTTGCCGACGC
ATGCCGATGGACGGCGGCCCCCCAACGCCGACGCTCGCCGAGGTGCTCTCCCTCTCCCCGCCAACTACTCCCCGTAGTCG
AGCGCCGTCGAGCTCCAGACGGCGAAGGATGGCGGCCCAGACCTTGGCGACGACAGCAGCTGGCGGCCAGACGGCGGCGG
AGGTCGCGCGGCCCCCTGATTCCACGCCGCCGGCCGAATCCGGCGAGGAAGGAGGCGTAGGAGTCCACACGGGGGAAGAA
GGCAAAGCGGCTGCCGCCGGAGAGGGATCCGACCCCTTCTTCCCCATCATCGCTGCTCCCTCGTTGCCGTCGCCAACACA
GCCTCCCTTGCTCCTGCCTCGTCATCGCGGAGCTCTCTTGGTGACGGAGGAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis