Browse Element(s) Details


OsAffx.3256.2.A1_at

Description tigr:9631.m01670
TID=OsAffx.3256.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1704011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3256.2.A1_at--42--3111Chr03:9457855..9457879 (25 bp)
AATTTGGGAGACGAGCAAGCTAGTC
LOC_Os03g17040
OsAffx.3256.2.A1_at--927--4071Chr03:9457866..9457890 (25 bp)
CGAGCAAGCTAGTCATCGGCTGCGG
LOC_Os03g17040
OsAffx.3256.2.A1_at--862--9131Chr03:9457910..9457934 (25 bp)
TGCGAGGTCCGCTCACCGGTTGATG
LOC_Os03g17040
OsAffx.3256.2.A1_at--543--7251Chr03:9457916..9457940 (25 bp)
GTCCGCTCACCGGTTGATGGCGATG
LOC_Os03g17040
OsAffx.3256.2.A1_at--473--3751Chr03:9457921..9457945 (25 bp)
CTCACCGGTTGATGGCGATGCTGGT
LOC_Os03g17040
OsAffx.3256.2.A1_at--440--871Chr03:9457932..9457956 (25 bp)
ATGGCGATGCTGGTGTCATGCCCCG
LOC_Os03g17040
OsAffx.3256.2.A1_at--256--7391Chr03:9457961..9457985 (25 bp)
GTGAGCTACCCGACATGCTGCTTTG
LOC_Os03g17040
OsAffx.3256.2.A1_at--223--2111Chr03:9457973..9457997 (25 bp)
ACATGCTGCTTTGTTCTCTCCCGGT
LOC_Os03g17040
OsAffx.3256.2.A1_at--185--4891Chr03:9457980..9458004 (25 bp)
GCTTTGTTCTCTCCCGGTCGGGCCA
LOC_Os03g17040
OsAffx.3256.2.A1_at--688--4151Chr03:9458035..9458059 (25 bp)
CGCCGAGCGAGTCGTGCAGTACCAT
LOC_Os03g17040
OsAffx.3256.2.A1_at--69--4011Chr03:9458047..9458071 (25 bp)
CGTGCAGTACCATCCGTGGCGGCCG
LOC_Os03g17040
Target Sequence 
AATTTGGGAGACGAGCAAGCTAGTCATCGGCTGCGGCGACGCAGAACGCGGCGGGTGCGAGGTCCGCTCACCGGTTGATG
GCGATGCTGGTGTCATGCCCCGCCGCGTGAGCTACCCGACATGCTGCTTTGTTCTCTCCCGGTCGGGCCACCCCGGCGTG
CACGGTGGAGAACCCCGCGCCGCCGAGCGAGTCGTGCAGTACCATCCGTGGCGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3256.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis