Browse Element(s) Details


Os.5482.1.S1_at

Description gb:AK070052.1
DB_XREF= gi:32980076
TID=Os.5482.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23497 ADP ribosylation GTPase-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040P09, full insert sequence.
FL= gb:AK070052.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1702011/11ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed
LOC_Os03g17040OsAffx.3256.2.A1_at11/113+9457823..9458209hypothetical protein
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5482.1.S1_at--1019--3051Chr03:9435169..9435193 (25 bp)
AATCAGAACGGAACCACCGGTGGCT
LOC_Os03g17020
Os.5482.1.S1_at--1069--1771Chr03:9435154..9435178 (25 bp)
ACCGGTGGCTCCTATTGGACGGAAG
LOC_Os03g17020
Os.5482.1.S1_at--1123--10651Chr03:9435124..9435148 (25 bp)
TTCCGCTGAGGTTGATTTCTTTCTA
LOC_Os03g17020
Os.5482.1.S1_at--1010--2311Chr03:9435063..9435087 (25 bp)
AAAGTGTGAGCGTCCGATGGTCCGT
LOC_Os03g17020
Os.5482.1.S1_at--634--9751Chr03:9434893..9434917 (25 bp)
TAATCTACACAAACTTCCTCTCATA
LOC_Os03g17020
Os.5482.1.S1_at--818--10371Chr03:9434822..9434846 (25 bp)
TTTTTTGTCTTGGACCTCCTACAGC
LOC_Os03g17020
Os.5482.1.S1_at--150--2511Chr03:9434739..9434763 (25 bp)
AACATGTTCCATATCGGTTGGCTGT
LOC_Os03g17020
Os.5482.1.S1_at--726--3031Chr03:9434683..9434707 (25 bp)
AATCCACCCAACTTGATGAGGCACT
LOC_Os03g17020
Os.5482.1.S1_at--1122--8231Chr03:9434664..9434688 (25 bp)
GGCACTGATAGGCTTTACGTCCTTT
LOC_Os03g17020
Os.5482.1.S1_at--997--9871Chr03:9434649..9434673 (25 bp)
TACGTCCTTTGTTATTGCCTACTTT
LOC_Os03g17020
Os.5482.1.S1_at--1117--4291Chr03:9434632..9434656 (25 bp)
CCTACTTTCTCGACATCTTTTGATG
LOC_Os03g17020
Target Sequence 
AATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATT
ATACTTGGAGAAGTTATATATGCCNAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGT
AAAAGAGTTTGTGTTTTTGTACGTTGTTTNCAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACT
GTCATCACAANTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTTCAACT
GCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTNTTCCNATTATTTGCTC
TAGTTGATAGTCNNNCCAAAAGGCCANNNNGTAACATGTTCCATATCGGTTGGCTGTGTTGTTATAGTGCTTTTCTTTGT
TTGGCGCCAATCCACCCAACTTGATGAGGCACTGATAGGCTTTACGTCCTTTGTTATTGCCTACTTTCTCGACATCTTTT
GATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis