Browse Element(s) Details


Os.10340.1.S1_at

Description gb:AK103544.1
DB_XREF= gi:32988753
TID=Os.10340.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132E05, full insert sequence.
FL= gb:AK064303.1 gb:AK103544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1700011/11rhamnose biosynthetic enzyme 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009225biological_processnucleotide-sugar metabolism
GO:0010192biological_processmucilage biosynthesis
GO:0010214biological_processseed coat development
GO:0019305biological_processdTDP-rhamnose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0008830molecular_functiondTDP-4-dehydrorhamnose 3,5-epimerase activity
GO:0008831molecular_functiondTDP-4-dehydrorhamnose reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10340.1.S1_at--563--931Chr03:9427409..9427433 (25 bp)
AGGAAGGTTCCTGCTAACTGAAGAT
LOC_Os03g17000
Os.10340.1.S1_at--38--9811Chr03:9427423..9427447 (25 bp)
TAACTGAAGATTTACGGGCGCGGGC
LOC_Os03g17000
Os.10340.1.S1_at--624--1211Chr03:9427451..9427475 (25 bp)
AGTTATGGAGGTTACGAGCGCGGGC
LOC_Os03g17000
Os.10340.1.S1_at--1024--6591Chr03:9427566..9427590 (25 bp)
GTAGGTGAACTACATACCGTTCGAT
LOC_Os03g17000
Os.10340.1.S1_at--426--7351Chr03:9427570..9427594 (25 bp)
GTGAACTACATACCGTTCGATACTT
LOC_Os03g17000
Os.10340.1.S1_at--831--10592Chr03:9427585..9427609 (25 bp)
TTCGATACTTAACCTATTTATTTAT
LOC_Os03g17000
Os.10340.1.S1_at--1097--111Chr03:9427612..9427636 (25 bp)
ATTCATAGCAATTCGTGTGCACGGC
LOC_Os03g17000
Os.10340.1.S1_at--802--3151Chr03:9427621..9427645 (25 bp)
AATTCGTGTGCACGGCATGTGCATA
LOC_Os03g17000
Os.10340.1.S1_at--937--7331Chr03:9427628..9427652 (25 bp)
GTGCACGGCATGTGCATATTATTTT
LOC_Os03g17000
Os.10340.1.S1_at--831--3751Chr03:9427705..9427729 (25 bp)
CTCTTTGAACTACTTACTCTATCTA
LOC_Os03g17000
Os.10340.1.S1_at--357--9871Chr03:9427719..9427743 (25 bp)
TACTCTATCTAAAAAAGGGCAATTC
LOC_Os03g17000
Target Sequence 
AGGAAGGTTCCTGCTAACTGAAGATTTACGGGCGCGGGCGGGAGTTATGGAGGTTACGAGCGCGGGCGGGAGTTATGGAG
GTTATTGCACGGATGCAGTTGTGACCATACTTTTTTTTGTAGTTTTTGGTTATATCTGGTGTTTTGTTAAGATACATGTA
GGTGAACTACATACCGTTCGATACTTAACCTATTTATTTATATATTCATAGCAATTCGTGTGCACGGCATGTGCATATTA
TTTTNNNNNNNNNNNNNNNGTGCGGTGGTTCAGAATGTATCTCACCTCTACGTTGTACTCTTTGAACTACTTACTCTATC
TAAAAAAGGGCAATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis