Browse Element(s) Details


Os.25983.1.S2_at

Description gb:AK072759.1
DB_XREF= gi:32982782
TID=Os.25983.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25983 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140G09, full insert sequence.
FL= gb:AK072759.1 gb:AK119667.1 gb:AK100762.1 gb:AK060280.1 gb:AK071965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1701011/11RNA and export factor-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed
LOC_Os03g17030Os.53106.1.S1_at11/113+9440218..9444446polyadenylate binding protein, types 1, 2, 3, 4 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25983.1.S2_at--897--6071Chr03:9428817..9428841 (25 bp)
GAGTATCATCCAAGTGTTGGCCTAC
LOC_Os03g17010
Os.25983.1.S2_at--831--3131Chr03:9428745..9428769 (25 bp)
AATTTTGATGGCTGGCTCGATGGTC
LOC_Os03g17010
Os.25983.1.S2_at--397--3791Chr03:9428730..9428754 (25 bp)
CTCGATGGTCATGTTTGTCAGGCAA
LOC_Os03g17010
Os.25983.1.S2_at--183--7091Chr03:9428704..9428728 (25 bp)
GTCAATGGCATCAGTTCAGTATTTT
LOC_Os03g17010
Os.25983.1.S2_at--72--7851Chr03:9428673..9428697 (25 bp)
GGTACGGTGTAGTCATCATTTAGAT
LOC_Os03g17010
Os.25983.1.S2_at--308--3051Chr03:9428622..9428646 (25 bp)
AATCGTTTAGATTCTTTGCCCAGAT
LOC_Os03g17010
Os.25983.1.S2_at--464--7671Chr03:9428556..9428580 (25 bp)
GGGTTTGCAATGTGGAAAGCTCCTA
LOC_Os03g17010
Os.25983.1.S2_at--260--10511Chr03:9428513..9428537 (25 bp)
TTCAATTTGCTCCTTCTGTTGTAAT
LOC_Os03g17010
Os.25983.1.S2_at--486--8291Chr03:9428485..9428509 (25 bp)
GGCTTGAGGTTTATTCTGCGTTGCA
LOC_Os03g17010
Os.25983.1.S2_at--138--6671Chr03:9428466..9428490 (25 bp)
GTTGCAGTTTTTTGCCCTCAAGCAT
LOC_Os03g17010
Os.25983.1.S2_at--951--8971Chr03:9428411..9428435 (25 bp)
TGAACATGTTTTCGCAGTGGCCTTT
LOC_Os03g17010
Target Sequence 
GAGTATCATCCAAGTGTTGGCCTACTTGATTGGAGGTGTTGAATAACAAATTTCATAACCTTATAAGAGGCAAATTTTGA
TGGCTGGCTCGATGGTCATGTTTGTCAGGCAATGTCAATGGCATCAGTTCAGTATTTTGGAAATGGTACGGTGTAGTCAT
CATTTAGATGGCATTAGGTTAACTGGAATTGAAATAATCGTTTAGATTCTTTGCCCAGATTCAATTACATAAAGCAAAAT
AGGTTTACTTTTTTTTTTTTTTTTGGGTTTGCAATGTGGAAAGCTCCTAGGTGATAGATGTGGAAATTTCAATTTGCTCC
TTCTGTTGTAATTGAGGCTTGAGGTTTATTCTGCGTTGCAGTTTTTTGCCCTCAAGCATTGCTGTCATCTGCTNGACTTC
TTCCTTTGGTGAACATGTTTTCGCAGTGGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25983.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis