Browse Element(s) Details


Os.51147.1.S1_at

Description gb:AK061148.1
DB_XREF= gi:32971166
TID=Os.51147.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-D09, full insert sequence.
FL= gb:AK061148.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1696011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51147.1.S1_at--4--7771Chr03:9405163..9405187 (25 bp)
GGTGAAGGACCAATACACGCCATTC
LOC_Os03g16960
Os.51147.1.S1_at--172--1831Chr03:9405147..9405171 (25 bp)
ACGCCATTCATCAATATCTACGGGT
LOC_Os03g16960
Os.51147.1.S1_at--686--251Chr03:9405134..9405158 (25 bp)
ATATCTACGGGTTCGCACAGTGCAC
LOC_Os03g16960
Os.51147.1.S1_at--320--10131Chr03:9405101..9405125 (25 bp)
TATCGCCGCTGACATGTGCACAATG
LOC_Os03g16960
Os.51147.1.S1_at--491--3031Chr03:9405080..9405104 (25 bp)
AATGCCTATCAACGGCGGTGTCCAG
LOC_Os03g16960
Os.51147.1.S1_at--755--6691Chr03:9405055..9405079 (25 bp)
GTTCGACCAATATTGCGGCGCGCAA
LOC_Os03g16960
Os.51147.1.S1_at--678--3471Chr03:9405030..9405054 (25 bp)
CAGGGATGCCGGATACTCTACAGTA
LOC_Os03g16960
Os.51147.1.S1_at--415--3831Chr03:9405004..9405028 (25 bp)
CTGCATGGTGCGCTACGAAATTTAC
LOC_Os03g16960
Os.51147.1.S1_at--634--491Chr03:9404913..9404937 (25 bp)
ATCGTGCACCACTAAGAACTACCTA
LOC_Os03g16960
Os.51147.1.S1_at--417--4991Chr03:9404871..9404895 (25 bp)
GCATGCATGCTTGTACGCATACACA
LOC_Os03g16960
Os.51147.1.S1_at--830--5751Chr03:9404806..9404830 (25 bp)
GACGTTTGATTAGCATGCGGTTCAT
LOC_Os03g16960
Target Sequence 
GGTGAAGGACCAATACACGCCATTCATCAATATCTACGGGTTCGCACAGTGCACGCGGGACCTATCGCCGCTGACATGTG
CACAATGCCTATCAACGGCGGTGTCCAGGTTCGACCAATATTGCGGCGCGCAACAGGGATGCCGGATACTCTACAGTAGC
TGCATGGTGCGCTACGAAATTTACCCCTTCTATTTTCCGCTCGCCACCAGTAGCACCGCCACTACCGACATGACAAAGTA
TACCAAGACCATCGTGCACCACTAAGAACTACCTACACATACATGGTGATGTGCATGCATGCTTGTACGCATACACATCA
CATACTAAAGTATAAACTATAGTACAATGTGTGNGGAGACGTTTGATTAGCATGCGGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis