Browse Element(s) Details


OsAffx.12887.2.S1_s_at

Description tigr:9631.m01656
TID=OsAffx.12887.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=heat shock cognate 70 kda protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1692011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12887.2.S1_s_at--356--6171Chr03:9391128..9391152 (25 bp)
GAGGATGCCATCAAGTGGCTCGACG
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--586--9371Chr03:9391055..9391079 (25 bp)
TCGAGAGCCTCTGCAATCCGATCAT
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--920--8091Chr03:9390916..9390940 (25 bp)
GGACTAAGCGAGTGGACTGAGTATA
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--680--251Chr03:9390894..9390918 (25 bp)
ATATGACATGTTGAGCGGGACGAAG
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--345--1891Chr03:9390849..9390873 (25 bp)
ACGTCATCATCATCTTTAGAGTTTC
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--871--10431Chr03:9390834..9390858 (25 bp)
TTAGAGTTTCATGCGGTCAAGCCGA
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--1137--4671Chr03:9390822..9390846 (25 bp)
GCGGTCAAGCCGAATAATGTCACTT
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--457--2071Chr03:9390801..9390825 (25 bp)
ACTTGAGTTGTTACTGGTTGTGACA
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--993--10151Chr03:9390772..9390796 (25 bp)
TATCTTGTTAAGGTTCTATGATCCG
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--73--2571Chr03:9390670..9390694 (25 bp)
AACTGTCATATGTGGTTCTTTTAGT
LOC_Os03g16920
OsAffx.12887.2.S1_s_at--977--7891Chr03:9390657..9390681 (25 bp)
GGTTCTTTTAGTTATCTCTGGTGTT
LOC_Os03g16920
Target Sequence 
GAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGCCGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTCGAGAG
CCTCTGCAATCCGATCATCTCAAAGATGTACCAGGGCGGCGCCGGTGGTCCGGCGGGCATGGACGAAGACGCCCCCAACG
GCAGTGCCGGCACCGGCGGTGGCAGCGGCGCTGGCCCCAAGATCGAGGAAGTGGACTAAGCGAGTGGACTGAGTATATGA
CATGTTGAGCGGGACGAAGAAGGAGCGATGCATTCTGGGACGTCATCATCATCTTTAGAGTTTCATGCGGTCAAGCCGAA
TAATGTCACTTGAGTTGTTACTGGTTGTGACAGTTATATCTTGTTAAGGTTCTATGATCCGATGTAGGTTGAGAGAGATA
TATATATATATATTATTACTACTACGGAGTGATAGGTTTAGCGGAGTAAATAAGTGTGAACTGTCATATGTGGTTCTTTT
AGTTATCTCTGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12887.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis