Browse Element(s) Details


Os.27502.1.S1_s_at

Description gb:AK067679.1
DB_XREF= gi:32977697
TID=Os.27502.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27502 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114G19, full insert sequence.
FL= gb:AK067679.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g168901/11glycosyltransferase family 14 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016020cellular_componentmembrane
GO:0008375molecular_functionacetylglucosaminyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27502.1.S1_s_at--637--2631Chr04:21519065..21519089 (25 bp)
AACCTCGTATAGCAACTTCACAATG
NONE
Os.27502.1.S1_s_at--402--2051Chr04:21519051..21519075 (25 bp)
ACTTCACAATGGACATATTCGGGCG
NONE
Os.27502.1.S1_s_at--370--231Chr04:21519037..21519061 (25 bp)
ATATTCGGGCGAACGCTTTGCCATG
NONE
Os.27502.1.S1_s_at--649--10291Chr04:21519021..21519045 (25 bp)
TTTGCCATGTCCACGGCAGGCGATG
NONE
Os.27502.1.S1_s_at--588--3491Chr04:21519005..21519029 (25 bp)
CAGGCGATGACTAGCTAGGGCAGCT
NONE
Os.27502.1.S1_s_at--787--10071Chr04:21518990..21519014 (25 bp)
TAGGGCAGCTAGTTACGATCTACAA
NONE
Os.27502.1.S1_s_at--1003--6491Chr04:21518958..21518982 (25 bp)
GATTTCTTGTGTGAGGCCTTGTTTA
NONE
Os.27502.1.S1_s_at--480--8436Chr09:16746942..16746961 (20 bp)
GGCCTTGTTTAGATCTCAAACGTCA
NONE
Os.27502.1.S1_s_at--665--1253Chr12:22551495..22551535 (25 bp)
AGATCTCAAACGTCACATCAAATGT
NONE
Os.27502.1.S1_s_at--554--7031Chr04:21518789..21518813 (25 bp)
GTAAATATTTGCCAACGACAGACTA
NONE
Os.27502.1.S1_s_at--1047--191Chr04:21518783..21518807 (25 bp)
ATTTGCCAACGACAGACTAATTATG
NONE
Target Sequence 
AACCTCGTATAGCAACTTCACAATGGACATATTCGGGCGAACGCTTTGCCATGTCCACGGCAGGCGATGACTAGCTAGGG
CAGCTAGTTACGATCTACAAAGTAATTGATTTCTTGTGTGAGGCCTTGTTTAGATCTCAAACGTCACATCAAATGTTTGG
ACACATGTATGGAGCATTAAATGTGGGGGAAAAAAACAATTACACAGTTTGCATGTAAATTGCGAGACGAATCTTTTGAG
CATAATTACGCCATGATTTGACAATATTATGCTACAGTAAATATTTGCCAACGACAGACTAATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27502.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis