Browse Element(s) Details


Os.11029.1.S1_at

Description gb:AK109474.1
DB_XREF= gi:32994683
TID=Os.11029.1
CNT=118
FEA=FLmRNA
TIER=FL+Stack
STK=22
UG=Os.11029 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-B01, full insert sequence.
FL= gb:AK072830.1 gb:AK109474.1 gb:AK099275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1686011/11Heat shock cognate 70 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16840OsAffx.25113.1.S1_at11/113+9325892..9326798hypothetical protein
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16870Os.16498.1.S1_at8/113+9352280..9354845expressed protein
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11029.1.S1_at--627--2691Chr03:9351894..9351918 (25 bp)
AAGCAGCGGACCAGGGCCCAAGATC
LOC_Os03g16860
Os.11029.1.S1_at--998--8191Chr03:9351921..9351945 (25 bp)
GGAAGTCGACTAAATGATCGATCTT
LOC_Os03g16860
Os.11029.1.S1_at--694--711Chr03:9351934..9351958 (25 bp)
ATGATCGATCTTTTATCGCTTTTAG
LOC_Os03g16860
Os.11029.1.S1_at--730--10151Chr03:9351947..9351971 (25 bp)
TATCGCTTTTAGTTATACCTGCAAT
LOC_Os03g16860
Os.11029.1.S1_at--736--311Chr03:9351961..9351985 (25 bp)
ATACCTGCAATAATTTGTCGTTCGT
LOC_Os03g16860
Os.11029.1.S1_at--84--4991Chr03:9351967..9351991 (25 bp)
GCAATAATTTGTCGTTCGTTTTACA
LOC_Os03g16860
Os.11029.1.S1_at--1112--9371Chr03:9351982..9352006 (25 bp)
TCGTTTTACACCGAATTCTTGAGTG
LOC_Os03g16860
Os.11029.1.S1_at--968--3131Chr03:9351995..9352019 (25 bp)
AATTCTTGAGTGCTCCTGCAACTTT
LOC_Os03g16860
Os.11029.1.S1_at--1121--10751Chr03:9352000..9352024 (25 bp)
TTGAGTGCTCCTGCAACTTTTTTGG
LOC_Os03g16860
Os.11029.1.S1_at--142--8591Chr03:9352022..9352046 (25 bp)
TGGTACGGGCTTTCATTATGGCCCC
LOC_Os03g16860
Os.11029.1.S1_at--994--10031Chr03:9352038..9352062 (25 bp)
TATGGCCCCGGTTTTGCTTTACTTG
LOC_Os03g16860
Target Sequence 
AAGCAGCGGACCAGGGCCCAAGATCGAGGAAGTCGACTAAATGATCGATCTTTTATCGCTTTTAGTTATACCTGCAATAA
TTTGTCGTTCGTTTTACACCGAATTCTTGAGTGCTCCTGCAACTTTTTTGGTACGGGCTTTCATTATGGCCCCGGTTTTG
CTTTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11029.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis