Browse Element(s) Details


OsAffx.25113.1.S1_at

Description tigr:9631.m01645
TID=OsAffx.25113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1684011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16812NANA3+9304811..9305068hypothetical protein
LOC_Os03g16824Os.24261.2.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16824Os.24261.1.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16840OsAffx.25113.1.S1_at11/113+9325892..9326798hypothetical protein
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed
LOC_Os03g16860Os.11029.1.S1_at11/113+9349211..9352126Heat shock cognate 70 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25113.1.S1_at--127--511Chr03:9326711..9326735 (25 bp)
ATCGGGATCCGTGGCATTTTCATGC
LOC_Os03g16840
OsAffx.25113.1.S1_at--910--9051Chr03:9326689..9326713 (25 bp)
TGCTCTGCCTTGCTAAGGAGAACCA
LOC_Os03g16840
OsAffx.25113.1.S1_at--576--871Chr03:9326285..9326631 (25 bp)
AGGCGGCTTGGTGAACCATGCGTAC
LOC_Os03g16840
OsAffx.25113.1.S1_at--1102--5131Chr03:9326240..9326264 (25 bp)
GCAAACAATAGCAATGGCCGGTGGA
LOC_Os03g16840
OsAffx.25113.1.S1_at--319--9951Chr03:9326203..9326227 (25 bp)
TACGCGACGGCTTCTGCAGGATGGA
LOC_Os03g16840
OsAffx.25113.1.S1_at--503--852Chr03:9326183..9326207 (25 bp)
ATGGAATGTTGTCCGGATCACACGC
LOC_Os03g16840
OsAffx.25113.1.S1_at--807--7951Chr03:9326169..9326193 (25 bp)
GGATCACACGCACGCAGATGCGCTT
LOC_Os03g16840
OsAffx.25113.1.S1_at--432--9051Chr03:9326137..9326161 (25 bp)
TGCAGGTTGCATACGAGGGAGATCC
LOC_Os03g16840
OsAffx.25113.1.S1_at--108--7491Chr03:9326015..9326039 (25 bp)
GTGGGTGTACGCGATCTGCAGATCA
LOC_Os03g16840
OsAffx.25113.1.S1_at--444--3931Chr03:9325964..9325988 (25 bp)
CGGCGAGCCGTGCAAGAATCACTTG
LOC_Os03g16840
OsAffx.25113.1.S1_at--948--8239Chr11:17939815..17939839 (25 bp)
GGCAAAATCGTACTCTCACCAGTGT
NONE
Target Sequence 
ATCGGGATCCGTGGCATTTTCATGCTCTGCCTTGCTAAGGAGAACCACCCCCGCGCTGTCGCCGCCGGAGCCGCGGCGGC
GTTCGCGCGTCGCGTCGCGGAGGGAGGCGGCTTGGTGAACCATGCGTACGGGGTCAGTGAACGTAGAAGGCAAACAATAG
CAATGGCCGGTGGAGGGGGGTGGGGTTACGCGACGGCTTCTGCAGGATGGAATGTTGTCCGGATCACACGCACGCAGATG
CGCTTCTGCCGCTGCAGGTTGCATACGAGGGAGATCCTGCAAAGGCACAACGCCGACGTCGCCGGCCGTGGCGGCATGGA
CTCATGGCCCGCCGACGTCCTGGGTGTGCGTCGCAGGATGGAGAAGCTCGTCGGGTGGGTGTACGCGATCTGCAGATCAC
GGCGGCGGCGGTGGCGCCACATCGCCGGCGAGCCGTGCAAGAATCACTTGCTGGATATGAGGGCAGGGGCAAAATCGTAC
TCTCACCAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis