Browse Element(s) Details


Os.24261.1.S1_at

Description gb:AK121978.1
DB_XREF= gi:37991601
TID=Os.24261.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033108K08, full insert sequence.
FL= gb:AK060190.1 gb:AK121978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1682411/11Spotted leaf protein 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16812NANA3+9304811..9305068hypothetical protein
LOC_Os03g16824Os.24261.2.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16824Os.24261.1.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16840OsAffx.25113.1.S1_at11/113+9325892..9326798hypothetical protein
LOC_Os03g16850OsAffx.12886.1.S1_at11/113+9338517..9339986Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24261.1.S1_at--328--10871Chr03:9313634..9313658 (25 bp)
TTGGAAGATCGCCTGCAATGCCTAG
LOC_Os03g16824
Os.24261.1.S1_at--236--9191Chr03:9313702..9313726 (25 bp)
TGCCATTAGCGTGATTCTAGGGCCA
LOC_Os03g16824
Os.24261.1.S1_at--328--7531Chr03:9313757..9313781 (25 bp)
GTGGAACTGTTAACCTGTGTGCCGT
LOC_Os03g16824
Os.24261.1.S1_at--1138--4491Chr03:9313777..9313801 (25 bp)
GCCGTTTGTACAATGCACCCAGTGA
LOC_Os03g16824
Os.24261.1.S1_at--1109--3451Chr03:9313796..9313820 (25 bp)
CAGTGATGAATGTTGGGACCCTCGA
LOC_Os03g16824
Os.24261.1.S1_at--1011--6971Chr03:9313846..9313870 (25 bp)
GTACCCGGTGCCTATTACAGGACTG
LOC_Os03g16824
Os.24261.1.S1_at--561--351Chr03:9313891..9313915 (25 bp)
ATAATTTTACTTGCCTGACTCACAG
LOC_Os03g16824
Os.24261.1.S1_at--442--6751Chr03:9313941..9313965 (25 bp)
GTTAAGCCAAGATTTCCCTACATAG
LOC_Os03g16824
Os.24261.1.S1_at--856--6611Chr03:9314030..9314054 (25 bp)
GTTGGTTTAAGCTTCAGGTCTGATC
LOC_Os03g16824
Os.24261.1.S1_at--442--7811Chr03:9314046..9314070 (25 bp)
GGTCTGATCTACATTTCTCAGCTAT
LOC_Os03g16824
Os.24261.1.S1_at--603--751Chr03:9314072..9314096 (25 bp)
ATGTACACCCTCTATTCTCAAATAT
LOC_Os03g16824
Target Sequence 
TTGGAAGATCGCCTGCAATGCCTAGCGTGGAGGTGTGTGGTTTTTGTTAAGCAATTAGAATCAGGAAGTGCCATTAGCGT
GATTCTAGGGCCATGAGCTTCTTGACAATTGAGTTTTGAGGTCGTGGAACTGTTAACCTGTGTGCCGTTTGTACAATGCA
CCCAGTGATGAATGTTGGGACCCTCGAGTTTTAGGGAGGTGCCATTNTACTTGTACCCGGTGCCTATTACAGGACTGGTN
TGTGGCTTCCAAGGTTGATAATTTTACTTGCCTGACTCACAGTTTCAGTGAATTGTTTGTTCACTTTGTTAAGCCAAGAT
TTCCCTACATAGCTATCCATAATCTATTGCATGGCTGGAGCATGGAGGGCTTTTCATATGGAATGCTCTTTCTTCAGTTG
GTTTAAGCTTCAGGTCTGATCTACATTTCTCAGCTATCATGTACACCCTCTATTCTCAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis