Browse Element(s) Details


Os.6755.1.S1_at

Description gb:AK060774.1
DB_XREF= gi:32970792
TID=Os.6755.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B09, full insert sequence.
FL= gb:AK060774.1 gb:AK065232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1680011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed
LOC_Os03g16790Os.27072.1.S1_at9/113+9286561..9291731DHHC zinc finger domain containing protein, expressed
LOC_Os03g16800Os.6755.1.S1_a_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16800Os.6755.1.S1_at11/113+9292814..9295735Clathrin assembly protein, putative, expressed
LOC_Os03g16812NANA3+9304811..9305068hypothetical protein
LOC_Os03g16824Os.24261.2.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed
LOC_Os03g16824Os.24261.1.S1_at11/113+9308458..9314139Spotted leaf protein 11, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6755.1.S1_at--683--5391Chr03:9293216..9293240 (25 bp)
GAAGCAGCAGTTCTTGACTCAGGAA
LOC_Os03g16800
Os.6755.1.S1_at--432--4931Chr03:9293142..9293166 (25 bp)
GCTTGGCCAAGCTCGATCGGGCTTA
LOC_Os03g16800
Os.6755.1.S1_at--966--491Chr03:9293127..9293151 (25 bp)
ATCGGGCTTACAACAATGGCTTCGC
LOC_Os03g16800
Os.6755.1.S1_at--372--591Chr03:9293089..9293113 (25 bp)
ATGCCTTATGGGATGCCTGCAGCAT
LOC_Os03g16800
Os.6755.1.S1_at--7--231Chr03:9293066..9293090 (25 bp)
ATATAACACGAACCCCATGCCAATG
LOC_Os03g16800
Os.6755.1.S1_at--682--851Chr03:9293044..9293068 (25 bp)
ATGGCTTACACTGCAAATACTGGGT
LOC_Os03g16800
Os.6755.1.S1_at--73--9891Chr03:9293017..9293041 (25 bp)
TACTACCCCACTTACTGAGTTATTC
LOC_Os03g16800
Os.6755.1.S1_at--1021--10251Chr03:9292992..9293016 (25 bp)
TTTGTTCATCCTTACAGTTGCTGTG
LOC_Os03g16800
Os.6755.1.S1_at--334--8771Chr03:9292957..9292981 (25 bp)
TGTATCGTGATCTCATAGCCTTGGG
LOC_Os03g16800
Os.6755.1.S1_at--1095--2611Chr03:9292892..9292916 (25 bp)
AACCTTTTGGTCTCTTATATGTAAT
LOC_Os03g16800
Os.6755.1.S1_at--387--6871Chr03:9292860..9292884 (25 bp)
GTTTGGAACCAATTGCGGCATCTAA
LOC_Os03g16800
Target Sequence 
GAAGCAGCAGTTCTTGACTCAGGAACAGATGATGTGGCAGCAGTACCAGAGGGATGGCATGCAGGGCCAGTCAAGCTTGG
CCAAGCTCGATCGGGCTTACAACAATGGCTTCGCCCCCAACCCAGCCATGCCTTATGGGATGCCTGCAGCATATAACACG
AACCCCATGCCAATGGCTTACACTGCAAATACTGGGTACTACTACCCCACTTACTGAGTTATTCTTTGTTCATCCTTACA
GTTGCTGTGAATTTTGTTCTGTATCGTGATCTCATAGCCTTGGGGTTGTNNCCAGTATCAGTTGTTGTTCCCCTGCCTCT
GGATCAAACCTTTTGGTCTCTTATATGTAATTCTATTTGTTTGGAACCAATTGCGGCATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis