Browse Element(s) Details


Os.27079.1.A1_at

Description gb:AK058992.1
DB_XREF= gi:32969010
TID=Os.27079.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-F09, full insert sequence.
FL= gb:AK058992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1691011/11SLT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16874Os.9995.1.S1_at10/113+9355035..9356774expressed protein
LOC_Os03g16880Os.54647.1.S1_at11/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16880Os.52782.1.S1_at1/113+9356944..9361643Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16890Os.8831.1.S1_at11/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16890Os.27502.1.S1_s_at1/113+9361976..9366471glycosyltransferase family 14 protein, putative, expressed
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27079.1.A1_at--517--71Chr03:9384043..9384067 (25 bp)
ATTGCTCTCATTTTTGCTAATTGGA
LOC_Os03g16910
Os.27079.1.A1_at--658--951Chr03:9384132..9384156 (25 bp)
AGGACCATGCTACATATCACAAGGA
LOC_Os03g16910
Os.27079.1.A1_at--650--7931Chr03:9384165..9384189 (25 bp)
GGATTAATTCGATCTTCGTTTCAGT
LOC_Os03g16910
Os.27079.1.A1_at--605--10111Chr03:9384246..9384270 (25 bp)
TATGCATAGTTTGTTGCCCGCTCGA
LOC_Os03g16910
Os.27079.1.A1_at--260--4811Chr03:9384265..9384289 (25 bp)
GCTCGATGTGCTTCCGTATGTGCAT
LOC_Os03g16910
Os.27079.1.A1_at--199--771Chr03:9384282..9384306 (25 bp)
ATGTGCATTATTGTCTCGAGCGGTT
LOC_Os03g16910
Os.27079.1.A1_at--1085--8711Chr03:9384293..9384317 (25 bp)
TGTCTCGAGCGGTTTGATTCTACAA
LOC_Os03g16910
Os.27079.1.A1_at--857--5391Chr03:9384362..9384386 (25 bp)
GAAGCTTGTTCTTGTGAGCATTCTT
LOC_Os03g16910
Os.27079.1.A1_at--78--7491Chr03:9384476..9384500 (25 bp)
GTGGGAGCTTTTTAGCACTTGTGAA
LOC_Os03g16910
Os.27079.1.A1_at--23--7351Chr03:9384496..9384520 (25 bp)
GTGAACGTTTTCCATTAATCGCTGG
LOC_Os03g16910
Os.27079.1.A1_at--1083--7271Chr03:9384544..9384568 (25 bp)
GTGCCAATGTGCCTATATATGTTAT
LOC_Os03g16910
Target Sequence 
ATTGCTCTCATTTTTGCTAATTGGAAAGGGAAAGGGAAACAATCGTAATTGATTGAAGCATTCTGGTATTTGGCATTTGA
AACATTTGTAGGACCATGCTACATATCACAAGGAACATATCTGGATTAATTCGATCTTCGTTTCAGTATATTTGTTTGGG
AANACCTTATGTATTATCTTTTGTTTTCATTAGAANTTCTGTGTATGCATAGTTTGTTGCCCGCTCGATGTGCTTCCGTA
TGTGCATTATTGTCTCGAGCGGTTTGATTCTACAAAATTGACTCCTGAAGAACTGTATAGGCATTCCATAGATAGGTGAG
AAGCTTGTTCTTGTGAGCATTCTTGGAAATTTCATCTCATTTATTTGATGGAAACTAGGAAAAGGAGTACTTATCAGNGC
TTTNTAGGANTNNCNAATGTTTAGTTGGAATTAGTGGGAGCTTTTTAGCACTTGTGAACGTTTTCCATTAATCGCTGGAA
GGCAAGTGTAAGTGATTGATGGTGCCAATGTGCCTATATATGTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27079.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis