Browse Element(s) Details


Os.16041.1.S1_at

Description gb:AK063650.1
DB_XREF= gi:32973668
TID=Os.16041.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-A11, full insert sequence.
FL= gb:AK063650.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1694011/11glyoxalase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16900Os.6346.1.S1_at11/113+9371400..9374798Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os03g16910Os.27079.1.A1_at11/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16910OsAffx.2532.1.S1_at1/113+9381693..9384605SLT1 protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16041.1.S1_at--471--10491Chr03:9398666..9398690 (25 bp)
TTCAGGCCGTACGTGACAAACCTCA
LOC_Os03g16940
Os.16041.1.S1_at--1089--6991Chr03:9398658..9398682 (25 bp)
GTACGTGACAAACCTCAGCAGGCGA
LOC_Os03g16940
Os.16041.1.S1_at--333--1751Chr03:9398647..9398671 (25 bp)
ACCTCAGCAGGCGAGTGTCATGGCC
LOC_Os03g16940
Os.16041.1.S1_at--1105--7111Chr03:9398631..9398655 (25 bp)
GTCATGGCCTCCGAAGGCGCCGTGA
LOC_Os03g16940
Os.16041.1.S1_at--634--10511Chr03:9398360..9398384 (25 bp)
TTCACGCCGCTGCACCAGAGGGAGA
LOC_Os03g16940
Os.16041.1.S1_at--554--8051Chr03:9398277..9398301 (25 bp)
GGAGATCTGCTTCGACTACGCGGAC
LOC_Os03g16940
Os.16041.1.S1_at--82--5251Chr03:9398175..9398199 (25 bp)
GAAGGTCGGGTACGTCAGGGACATC
LOC_Os03g16940
Os.16041.1.S1_at--862--171Chr03:9398082..9398106 (25 bp)
ATTTTAGCCGTGTATGTTCAATAAT
LOC_Os03g16940
Os.16041.1.S1_at--1148--10491Chr03:9398066..9398090 (25 bp)
TTCAATAATGTGAACTGTTCTCCAC
LOC_Os03g16940
Os.16041.1.S1_at--112--5231Chr03:9398024..9398048 (25 bp)
GAATAAAACTGTGATCTCGTTGGTT
LOC_Os03g16940
Os.16041.1.S1_at--1106--7391Chr03:9398014..9398038 (25 bp)
GTGATCTCGTTGGTTGTGGTCTGTA
LOC_Os03g16940
Target Sequence 
TTCAGGCCGTACGTGACAAACCTCAGCAGGCGAGTGTCATGGCCTCCGAAGGCGCCGTGAGCCCGGCGTTCGCCTACACC
GTCGTCTACGTCAAGGACNTCGCCAAGTCGGCCGCCTTCTACTCCGCCGCGTTCGGCTACACCNTCCGCCGCCTCGACCA
ATCCCACAAGTGGNCGGAGCTGGAGAGCGGGACGACGACGATCGCGTTCACGCCGCTGCACCAGAGGGAGACGGACGCNC
TGACGGGNGCGGTGCAGCTGCCGGACTCGGCCGGCGAGCGGGNGCCCGTGGAGATCTGCTTCGACTACGCGGACGTCGAC
GCGGCGTACCGGCGGGCCGTGGACAGCGGCGCCGTGCCGGTGAGCCCGCCGGAGCAGAAGANCTGGGNCCAGAAGGTCGG
GTACGTCAGGGACATCGACGGNATCATCGTGCGCATGGNCAGCCACGTCCGCGCGTAGCGGCCATGCGCCTGCTCGGTTG
GGGGATTTTAGCCGTGTATGTTCAATAATGTGAACTGTTCTCCACNGATCTGTTGATATATGGAATAAAACTGTGATCTC
GTTGGTTGTGGTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis