Browse Element(s) Details


OsAffx.12888.1.S1_at

Description tigr:9631.m01661
TID=OsAffx.12888.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1697011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16920OsAffx.12887.2.S1_s_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16920OsAffx.12887.2.S1_at11/113+9390566..9395119Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os03g16929NANA3+9395695..9396088NA
LOC_Os03g16940Os.16041.1.S1_at11/113+9397996..9398883glyoxalase family protein, expressed
LOC_Os03g16950Os.17918.1.S1_at11/113+9400750..940197633 kDa secretory protein, putative, expressed
LOC_Os03g16960Os.51147.1.S1_at11/113+9404652..940589433 kDa secretory protein, putative, expressed
LOC_Os03g16970OsAffx.12888.1.S1_at11/113+9412869..9413507expressed protein
LOC_Os03g16980Os.12349.1.S1_at11/113+9415551..9419660RmlD substrate binding domain containing protein, expressed
LOC_Os03g16990OsAffx.25114.1.S1_at11/113+9420030..9420745hypothetical protein
LOC_Os03g17000Os.10340.1.S1_at11/113+9424485..9427752rhamnose biosynthetic enzyme 1, putative, expressed
LOC_Os03g17010Os.25983.1.S2_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17010Os.25983.1.S1_a_at11/113+9428357..9432082RNA and export factor-binding protein, putative, expressed
LOC_Os03g17020Os.5482.1.S1_at11/113+9434631..9437965ARF GAP-like zinc finger-containing protein ZIGA2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12888.1.S1_at--993--9231Chr03:9413424..9413448 (25 bp)
TCCTTCTCCAAATCTTAGCGACGAA
LOC_Os03g16970
OsAffx.12888.1.S1_at--349--5791Chr03:9413405..9413429 (25 bp)
GACGAAATCAACCAGCGACGCGGCA
LOC_Os03g16970
OsAffx.12888.1.S1_at--232--5811Chr03:9413389..9413413 (25 bp)
GACGCGGCAACGTCAATCGTGGCAT
LOC_Os03g16970
OsAffx.12888.1.S1_at--765--5991Chr03:9413312..9413336 (25 bp)
GAGACCAACCTAACGATGGCCACGG
LOC_Os03g16970
OsAffx.12888.1.S1_at--260--6231Chr03:9413298..9413322 (25 bp)
GATGGCCACGGCTCTGGCGAGACCA
LOC_Os03g16970
OsAffx.12888.1.S1_at--1158--1372Chr08:6260976..6261000 (25 bp)
AGACCACCCTGCGTCAGTGTTGAGG
NONE
OsAffx.12888.1.S1_at--731--8351Chr03:9413229..9413253 (25 bp)
GGCGGTGTCGGTGTTGACCTCTCCC
LOC_Os03g16970
OsAffx.12888.1.S1_at--958--3631Chr03:9413200..9413224 (25 bp)
CTTCGTTGGCACTGAGCGAACGCAA
LOC_Os03g16970
OsAffx.12888.1.S1_at--539--6311Chr03:9413139..9413163 (25 bp)
GATGACGAGGACAGGCACTAGGACA
LOC_Os03g16970
OsAffx.12888.1.S1_at--1060--2011Chr03:9413123..9413147 (25 bp)
ACTAGGACAACACAGTGCGCCATCG
LOC_Os03g16970
OsAffx.12888.1.S1_at--727--831Chr03:9413093..9413117 (25 bp)
ATGGATCAGGTCCTTGCTCACCTTA
LOC_Os03g16970
Target Sequence 
TCCTTCTCCAAATCTTAGCGACGAAATCAACCAGCGACGCGGCAACGTCAATCGTGGCATCGGGGCATCGAAGGTGGACT
TCGCAGGGATTAAAAAAAAAGGAGACAAAGGTGAGACCAACCTAACGATGGCCACGGCTCTGGCGAGACCACCCTGCGTC
AGTGTTGAGGTTCGGCTGGTGGTGATGAGGTCGACGGCGGTGTCGGTGTTGACCTCTCCCTTGCCTTCGTTGGCACTGAG
CGAACGCAAGGCCGCCCCGTACGCCGCCGCAACAAGGGAGGAGGCGATGACGAGGACAGGCACTAGGACAACACAGTGCG
CCATCGCCGCCATGGATCAGGTCCTTGCTCACCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12888.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis