Browse Element(s) Details


Os.26805.1.S1_at

Description gb:AK106253.1
DB_XREF= gi:32991462
TID=Os.26805.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E06, full insert sequence.
FL= gb:AK106253.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1712011/11Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17050OsAffx.25115.1.S1_at11/113+9459157..9468019expressed protein
LOC_Os03g17060OsAffx.12889.1.S1_s_at11/113+9468514..9469905RNA-binding protein, putative, expressed
LOC_Os03g17070Os.5694.1.S1_at11/113+9470474..9471545ATP synthase B chain, chloroplast precursor, putative, expressed
LOC_Os03g17084Os.11219.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.47714.1.A1_s_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.12890.1.S1_at11/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084OsAffx.10929.1.S1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17084Os.7519.1.A1_x_at3/113+9471941..9476545Core histone H2A/H2B/H3/H4 family protein
LOC_Os03g17100Os.12821.1.S1_at11/113+9477951..9478877Histone H2A, putative, expressed
LOC_Os03g17110NANA3+9479970..9481728transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g17120Os.26805.1.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17120Os.26805.2.S1_at11/113+9485782..9489983Arginine biosynthesis bifunctional protein argJ 1, putative, expressed
LOC_Os03g17130OsAffx.12891.1.S1_at11/113+9492990..9497209Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g17140Os.51136.1.S1_at10/113+9498935..9500161expressed protein
LOC_Os03g17150Os.57344.1.S1_at10/113+9503970..9504901zinc finger DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006526biological_processarginine biosynthesis
GO:0004358molecular_functionglutamate N-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26805.1.S1_at--165--7991Chr03:9488227..9488251 (25 bp)
GGATGATTCATCCAAATATGGCAAC
LOC_Os03g17120
Os.26805.1.S1_at--511--271Chr03:9488215..9488236 (22 bp)
ATATGGCAACAATGCTTGGTGTTTT
LOC_Os03g17120
Os.26805.1.S1_at--384--2451Chr03:9488105..9488229 (25 bp)
AACAATGCTTGGTGTTTTAACAACT
LOC_Os03g17120
Os.26805.1.S1_at--558--9291Chr03:9486983..9487007 (25 bp)
TCCCTGGTTAAAGTATGATACTGTT
LOC_Os03g17120
Os.26805.1.S1_at--288--6911Chr03:9486971..9486995 (25 bp)
GTATGATACTGTTTAGCAGCAAAAT
LOC_Os03g17120
Os.26805.1.S1_at--249--3731Chr03:9486942..9486966 (25 bp)
CTAATTAGGAGAGGATTGACACCCC
LOC_Os03g17120
Os.26805.1.S1_at--482--1331Chr03:9486933..9486957 (25 bp)
AGAGGATTGACACCCCTCTGTCATT
LOC_Os03g17120
Os.26805.1.S1_at--379--4291Chr03:9486919..9486943 (25 bp)
CCTCTGTCATTCGTTAGCCCAGAAA
LOC_Os03g17120
Os.26805.1.S1_at--713--10611Chr03:9486910..9486934 (25 bp)
TTCGTTAGCCCAGAAAGCCTGAGTT
LOC_Os03g17120
Os.26805.1.S1_at--488--4551Chr03:9486903..9486927 (25 bp)
GCCCAGAAAGCCTGAGTTGTTAAAT
LOC_Os03g17120
Os.26805.1.S1_at--483--3131Chr03:9486881..9486905 (25 bp)
AATTATTTTTTATCAGGCCGCTGTA
LOC_Os03g17120
Target Sequence 
GGATGATTCATCCAAATATGGCAACAATGCTTGGTGTTTTAACAACTGACGCTCAAGTCAGCAGTGATGTTTGGAGAGAA
ATGGTCCGAACATCAGTGAGTAGAAGCTTCAATCAAATAACAGTGGATGGTGATACGAGTACCAATGACTGTGTTATTGC
TCTGGCTAGTGGGTTATCTGGTTTATCCAGTATCCTTACTCATGATAGCACTGAAGCTCAACAGTTCCAAGCATGCTTAG
ATGCTGTAATGCAAGGTCTTGCAAAATCCATAGCATGGGATGGTGAGGGTGCAACATGTCTAATTGAGGTTACTGTAGCT
GGTGCCAATAATGAGGCTGAAGCAGCTAAAATTGCTCGTTCAGTGGCATCTTCCTCCCTGGTTAAAGTATGATACTGTTT
AGCAGCAAAATTTTGCTAATTAGGAGAGGATTGACACCCCTCTGTCATTCGTTAGCCCAGAAAGCCTGAGTTGTTAAATT
ATTTTTTATCAGGCCGCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis