Browse Element(s) Details


OsAffx.11269.1.S1_x_at

Description tigr:9629.m02959
TID=OsAffx.11269.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3178011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31760OsAffx.23465.2.S1_at10/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31760OsAffx.23465.1.S1_x_at9/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31790OsAffx.11270.1.S1_x_at11/111+17744864..17745530hypothetical protein
LOC_Os01g31800Os.12821.1.S1_at5/111+17747377..17748137Histone H2A, putative, expressed
LOC_Os01g31810NANA1+17752195..17752860Histone H2B, putative, expressed
LOC_Os01g31820OsAffx.11271.1.S1_at11/111+17759708..17760484hypothetical protein
LOC_Os01g31830OsAffx.11272.1.S1_at11/111+17762620..17763060hypothetical protein
LOC_Os01g31840OsAffx.19542.3.S1_x_at10/111+17764328..17768550retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11269.1.S1_x_at--489--7851Chr01:17740386..17740410 (25 bp)
GGTAGCAACAGCATCATGCGGCTGG
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--954--6951Chr01:17740387..17740411 (25 bp)
GTAGCAACAGCATCATGCGGCTGGG
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--1017--7711Chr01:17740450..17740474 (25 bp)
GGGTGGCAGCAGCATCAGGCTGCAG
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--1087--4691Chr01:17740480..17740504 (25 bp)
GCGGCGGCAAGGGAGTAGCAGCTGC
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--1078--10011Chr01:17740495..17740519 (25 bp)
TAGCAGCTGCCGACGGCGACCAGCA
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--724--1511Chr01:17740519..17740543 (25 bp)
AGCAGCAGCAACACGCGCCAGGAGC
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--678--1491Chr01:17740525..17740549 (25 bp)
AGCAACACGCGCCAGGAGCTGCAAG
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--818--2471Chr01:17740528..17740552 (25 bp)
AACACGCGCCAGGAGCTGCAAGGAA
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--342--1831Chr01:17740531..17740555 (25 bp)
ACGCGCCAGGAGCTGCAAGGAAACA
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--842--9011Chr01:17740544..17740568 (25 bp)
TGCAAGGAAACAGCAGGAGCACCAT
LOC_Os01g31780
OsAffx.11269.1.S1_x_at--387--5011Chr01:17740556..17740635 (25 bp)
GCAGGAGCACCATGGAACGGAATCA
LOC_Os01g31780
Target Sequence 
GGTAGCAACAGCATCATGCGGCTGGGGCAGTGGCGGCGGTGGCTGGGGAACAGCGGCGGCAAGGGGGTGGCAGCAGCATC
AGGCTGCAGGGGCGGCGGCGGCAAGGGAGTAGCAGCTGCCGACGGCGACCAGCAGCAGCAGCAACACGCGCCAGGAGCTG
CAAGGAAACAGCAGGAGCACCATGGAACGGAATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11269.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis