Browse Element(s) Details


OsAffx.23465.1.S1_x_at

Description gb:NM_193704.1
DB_XREF= gi:34914491
GEN=B1080D07.27
TID=OsAffx.23465.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative palmitoyl-acyl carrier protein thioesterase precursor (B1080D07.27), mRNA.
PROD=putative palmitoyl-acyl carrier proteinthioesterase precursor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g317609/11Acyl-ACP thioesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific
LOC_Os01g31750OsAffx.667.1.S1_at11/111+17704455..17707193transposon protein, putative, Mutator sub-class
LOC_Os01g31760OsAffx.23465.2.S1_at10/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31760OsAffx.23465.1.S1_x_at9/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009536cellular_componentplastid
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23465.1.S1_x_at--997--7231NONE
GTCCGAGCAACCAGTACATGGGTGA
NONE
OsAffx.23465.1.S1_x_at--659--1031Chr01:17713665..17713689 (25 bp)
AGGGACGAAATCTCGCCGTGGTTCA
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--393--7511Chr01:17713682..17713706 (25 bp)
GTGGTTCATCGACAGGCACGCGATT
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--498--1831Chr01:17713699..17713723 (25 bp)
ACGCGATTGACGAGGTGGCCACCGA
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--555--3011Chr01:17713746..17713770 (25 bp)
AATGCCACATATGTCGATTCCGACT
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--950--6571NONE
GATTCCGACTTGAAGACTCTGCCTG
NONE
OsAffx.23465.1.S1_x_at--174--9051Chr01:17716120..17716144 (25 bp)
TGCAGCAGCACCAGCTTAGTAGCAT
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--590--10291Chr01:17716195..17716219 (25 bp)
TTTGCCAACCTGATGAAGACACGAT
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--88--811Chr01:17716248..17716272 (25 bp)
ATGGGACCTTCACTTTCGCAAGAGA
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--157--3211Chr01:17716277..17716301 (25 bp)
CAATGGCCACCATAGCTTAGCTGGT
LOC_Os01g31760
OsAffx.23465.1.S1_x_at--698--1171Chr01:17716324..17716348 (25 bp)
AGTACACTCATCTTCTGCAACTAAA
LOC_Os01g31760
Target Sequence 
GTCCGAGCAACCAGTACATGGGTGATGATGAATAAGGTCACCAGGAGGCTGTCGAAGATGCCGAAGGAGGTCAGGGACGA
AATCTCGCCGTGGTTCATCGACAGGCACGCGATTGACGAGGTGGCCACCGACAAGATCATCAAGCTCGACACCAATGCCA
CATATGTCGATTCCGACTTGAAGACTCTGCCTGACCAATTCCTGCAGCAGCACCAGCTTAGTAGCATCATTCTGGAATAC
AGGAAGGAATGTGGGAGCTCAGATGTTGTGCAATCAATTTGCCAACCTGATGAAGACACGATTATGCCGGGAGAAAATGT
TAGCATTGTGATGGGACCTTCACTTTCGCAAGAGATCATCAATGGCCACCATAGCTTAGCTGGTGCGCTCCAGCAGTGGC
CAACGAAGTACACTCATCTTCTGCAACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23465.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis