Browse Element(s) Details


OsAffx.23465.2.S1_at

Description tigr:9629.m02957
TID=OsAffx.23465.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyl-ACP thioesterase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3176010/11Acyl-ACP thioesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31714NANA1+17686528..17689449retrotransposon protein, putative, unclassified
LOC_Os01g31730NANA1+17690289..17695893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31740NANA1+17697397..17698109retrotransposon, putative, centromere-specific
LOC_Os01g31750OsAffx.667.1.S1_at11/111+17704455..17707193transposon protein, putative, Mutator sub-class
LOC_Os01g31760OsAffx.23465.2.S1_at10/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31760OsAffx.23465.1.S1_x_at9/111+17711086..17716436Acyl-ACP thioesterase family protein
LOC_Os01g31770Os.19184.1.S1_at10/111+17721129..17731288oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os01g31780OsAffx.11269.1.S1_at11/111+17740329..17740665hypothetical protein
LOC_Os01g31780OsAffx.11269.1.S1_x_at11/111+17740329..17740665hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0009536cellular_componentplastid
GO:0000036molecular_functionacyl carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23465.2.S1_at--561--7871Chr01:17713459..17713483 (25 bp)
GGTTTTCGCACCTCGGTGGTAAGCG
LOC_Os01g31760
OsAffx.23465.2.S1_at--449--9351Chr01:17713464..17713611 (25 bp)
TCGCACCTCGGTGGTAAGCGTACAT
LOC_Os01g31760
OsAffx.23465.2.S1_at--515--1751Chr01:17713468..17713615 (25 bp)
ACCTCGGTGGTAAGCGTACATGGGT
LOC_Os01g31760
OsAffx.23465.2.S1_at--843--6571Chr01:17713761..17714005 (25 bp)
GATTCCGACTTGAAGCCGAAGCGCA
LOC_Os01g31760
OsAffx.23465.2.S1_at--358--5692Chr10:21968038..21968063 (23 bp)
GACTTGAAGCCGAAGCGCAGCGATT
NONE
OsAffx.23465.2.S1_at--427--3631Chr01:17713769..17714013 (25 bp)
CTTGAAGCCGAAGCGCAGCGATTTG
LOC_Os01g31760
OsAffx.23465.2.S1_at--580--4111Chr01:17713997..17714021 (25 bp)
CGAAGCGCAGCGATTTGGATATGAA
LOC_Os01g31760
OsAffx.23465.2.S1_at--103--6531Chr01:17714008..17714032 (25 bp)
GATTTGGATATGAACCATCATGTCA
LOC_Os01g31760
OsAffx.23465.2.S1_at--705--5431Chr01:17714019..17714043 (25 bp)
GAACCATCATGTCAACAACGTCAAA
LOC_Os01g31760
OsAffx.23465.2.S1_at--653--1891Chr01:17714036..17714060 (25 bp)
ACGTCAAATATGTAAGGTGGATGCT
LOC_Os01g31760
OsAffx.23465.2.S1_at--852--7511NONE
GTGGATGCTTGAGACTCTGCCTGAC
NONE
Target Sequence 
GGTTTTCGCACCTCGGTGGTAAGCGTACATGGGTGATGATGAATAAGGTCACCAGGAGGCTGTCGAAGATGCCGAAGGAG
GTCAGGGACGAAATCTCGCCGTGGTTCATCGACAGGCACGCGATTGACGAGGTGGCCACCGACAAGATCATCAAGCTCGA
CACCAATGCCACATATGTCGATTCCGACTTGAAGCCGAAGCGCAGCGATTTGGATATGAACCATCATGTCAACAACGTCA
AATATGTAAGGTGGATGCTTGAGACTCTGCCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23465.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis