Browse Element(s) Details


OsAffx.11277.1.S1_at

Description tigr:9629.m02980
TID=OsAffx.11277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3197010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31900Os.56216.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31900Os.14919.1.S1_at1/111+17800963..17803924transposon protein, putative, Mutator sub-class
LOC_Os01g31910NANA1+17805988..17806677hypothetical protein
LOC_Os01g31920OsAffx.11273.2.S1_at8/111+17809172..17812937hypothetical protein
LOC_Os01g31930OsAffx.11274.1.S1_at10/111+17814783..17815411hypothetical protein
LOC_Os01g31940Os.54587.1.S1_at11/111+17817324..17818664expressed protein
LOC_Os01g31950OsAffx.11275.1.S1_at11/111+17820975..17821482hypothetical protein
LOC_Os01g31960OsAffx.11276.1.S1_at11/111+17823362..17824148hypothetical protein
LOC_Os01g31970OsAffx.11277.1.S1_at10/111+17828069..17829185hypothetical protein
LOC_Os01g31980Os.50605.1.S1_at11/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.4866.1.S1_at10/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.46608.1.A1_s_at1/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31990NANA1+17844408..17844659hypothetical protein
LOC_Os01g32000OsAffx.15648.1.S1_at1/111+17847424..17849300hypothetical protein
LOC_Os01g32010NANA1+17850909..17856781retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11277.1.S1_at--106--10231Chr01:17828116..17828140 (25 bp)
TTTGGCAAGGGCTAAGGGCATTCTT
LOC_Os01g31970
OsAffx.11277.1.S1_at--213--8291Chr01:17828132..17828156 (25 bp)
GGCATTCTTGCCCTTGTGCCGAACA
LOC_Os01g31970
OsAffx.11277.1.S1_at--767--8691Chr01:17828146..17828281 (25 bp)
TGTGCCGAACACTGAATACTCTCCT
LOC_Os01g31970
OsAffx.11277.1.S1_at--658--5231Chr01:17828159..17828294 (25 bp)
GAATACTCTCCTGTTTGTTCGAGAA
LOC_Os01g31970
OsAffx.11277.1.S1_at--954--5651Chr01:17828309..17828333 (25 bp)
GACATAAACATCCAAATCTCTAACA
LOC_Os01g31970
OsAffx.11277.1.S1_at--1022--451NONE
ATCTCTAACAATACCACGTTCTCGA
NONE
OsAffx.11277.1.S1_at--1107--4351Chr01:17829071..17829091 (21 bp)
CCACGTTCTCGATTGCTCATAGGAA
LOC_Os01g31970
OsAffx.11277.1.S1_at--1089--5251Chr01:17829089..17829113 (25 bp)
GAATGAGTACCTTCGTGGTTTGGTT
LOC_Os01g31970
OsAffx.11277.1.S1_at--312--8591Chr01:17829104..17829128 (25 bp)
TGGTTTGGTTGATTGTTCTCCATCA
LOC_Os01g31970
OsAffx.11277.1.S1_at--960--6592Chr01:17829114..17829138 (25 bp)
GATTGTTCTCCATCAAAATCACTAA
LOC_Os01g31970
OsAffx.11277.1.S1_at--1049--3071Chr01:17829130..17829154 (25 bp)
AATCACTAACCTTTTCTGAAGTTGG
LOC_Os01g31970
Target Sequence 
TTTGGCAAGGGCTAAGGGCATTCTTGCCCTTGTGCCGAACACTGAATACTCTCCTGTTTGTTCGAGAAAAACAATTGAAT
TTGACATAAACATCCAAATCTCTAACAATACCACGTTCTCGATTGCTCATAGGAATGAGTACCTTCGTGGTTTGGTTGAT
TGTTCTCCATCAAAATCACTAACCTTTTCTGAAGTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis