Browse Element(s) Details


Os.50605.1.S1_at

Description gb:AK122047.1
DB_XREF= gi:37991693
TID=Os.50605.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114C22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114C22, full insert sequence.
FL= gb:AK122047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3198011/11MATE efflux family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31910NANA1+17805988..17806677hypothetical protein
LOC_Os01g31920OsAffx.11273.2.S1_at8/111+17809172..17812937hypothetical protein
LOC_Os01g31930OsAffx.11274.1.S1_at10/111+17814783..17815411hypothetical protein
LOC_Os01g31940Os.54587.1.S1_at11/111+17817324..17818664expressed protein
LOC_Os01g31950OsAffx.11275.1.S1_at11/111+17820975..17821482hypothetical protein
LOC_Os01g31960OsAffx.11276.1.S1_at11/111+17823362..17824148hypothetical protein
LOC_Os01g31970OsAffx.11277.1.S1_at10/111+17828069..17829185hypothetical protein
LOC_Os01g31980Os.50605.1.S1_at11/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.4866.1.S1_at10/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31980Os.46608.1.A1_s_at1/111+17831186..17839170MATE efflux family protein, expressed
LOC_Os01g31990NANA1+17844408..17844659hypothetical protein
LOC_Os01g32000OsAffx.15648.1.S1_at1/111+17847424..17849300hypothetical protein
LOC_Os01g32010NANA1+17850909..17856781retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32020OsAffx.24330.2.S1_at2/111+17858623..17860983retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g32030OsAffx.22629.1.S1_at2/111+17861742..17863764retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50605.1.S1_at--418--10011Chr01:17835723..17835747 (25 bp)
TAGACTGCATAGACCCTGAAATCGT
LOC_Os01g31980
Os.50605.1.S1_at--742--2271Chr01:17835705..17835729 (25 bp)
AAATCGTTATACATGCCACGCTATA
LOC_Os01g31980
Os.50605.1.S1_at--201--4371Chr01:17835690..17835714 (25 bp)
CCACGCTATATGTCGGCATGCTTTT
LOC_Os01g31980
Os.50605.1.S1_at--478--7191Chr01:17835679..17835703 (25 bp)
GTCGGCATGCTTTTCACACATAAAT
LOC_Os01g31980
Os.50605.1.S1_at--102--3111Chr01:17835645..17835669 (25 bp)
CAATTCACATGCCATGCAGTACATG
LOC_Os01g31980
Os.50605.1.S1_at--581--7991Chr01:17835621..17835645 (25 bp)
GGATGATCCGTTTGTACTCTTGCAA
LOC_Os01g31980
Os.50605.1.S1_at--67--2011Chr01:17835606..17835630 (25 bp)
ACTCTTGCAAATTTAGCCTTCACTA
LOC_Os01g31980
Os.50605.1.S1_at--1127--3651Chr01:17835589..17835613 (25 bp)
CTTCACTATCATTCTAGCTAGACTT
LOC_Os01g31980
Os.50605.1.S1_at--812--2991Chr01:17835563..17835587 (25 bp)
AATGTTATCTCTATGCTTTATCCTG
LOC_Os01g31980
Os.50605.1.S1_at--622--9911Chr01:17835494..17835518 (25 bp)
TACTGATGCAGTTTTCCTTTTAGAT
LOC_Os01g31980
Os.50605.1.S1_at--365--10651Chr01:17835481..17835505 (25 bp)
TTCCTTTTAGATGGGACTGGCATGT
LOC_Os01g31980
Target Sequence 
TAGACTGCATAGACCCTGAAATCGTTATACATGCCACGCTATATGTCGGCATGCTTTTCACACATAAATATTTTCTCCCA
ATTCACATGCCATGCAGTACATGGATGATCCGTTTGTACTCTTGCAAATTTAGCCTTCACTATCATTCTAGCTAGACTTT
AATGTTATCTCTATGCTTTATCCTGATAGTTTGACTTTTGTTCTTCCTTGAAATATCTATATATTTTATTACTGATGCAG
TTTTCCTTTTAGATGGGACTGGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis