Browse Element(s) Details


Os.53372.1.S1_x_at

Description gb:AK073619.1
DB_XREF= gi:32983642
TID=Os.53372.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047E14, full insert sequence.
FL= gb:AK073619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6279011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53372.1.S1_x_at--127--6871Chr01:36691731..36691755 (25 bp)
GTATACTACCAACCGGCAAACTGCA
LOC_Os01g62790
Os.53372.1.S1_x_at--633--3351Chr01:36691794..36691818 (25 bp)
CACGCAGCGGCAAACAACAGTTCAT
LOC_Os01g62790
Os.53372.1.S1_x_at--608--7811Chr01:36691870..36691894 (25 bp)
GGTCAGTACCAGAATACCCAGCGTA
LOC_Os01g62790
Os.53372.1.S1_x_at--56--8071Chr01:36691899..36691923 (25 bp)
GGAGAACACATCATATCGTCATTCA
LOC_Os01g62790
Os.53372.1.S1_x_at--1032--1511Chr01:36691932..36691956 (25 bp)
AGCAGCAACTACATGGCACGAGCCA
LOC_Os01g62790
Os.53372.1.S1_x_at--456--5291Chr01:36691981..36692005 (25 bp)
GAATGGCAGTAACGCTCTCAGACCG
LOC_Os01g62790
Os.53372.1.S1_x_at--651--431Chr01:36692062..36692086 (25 bp)
ATCTTTAGCTCTTGCCTGACAATAT
LOC_Os01g62790
Os.53372.1.S1_x_at--211--651Chr01:36692093..36692117 (25 bp)
ATGCATCACATTTCGATTCCCTTAG
LOC_Os01g62790
Os.53372.1.S1_x_at--532--6291Chr01:36692107..36692131 (25 bp)
GATTCCCTTAGGTCTCGACAAACAA
LOC_Os01g62790
Os.53372.1.S1_x_at--1123--10451Chr01:36692152..36692176 (25 bp)
TTAGCGCAAGTTATTGCCAGCCAGC
LOC_Os01g62790
Os.53372.1.S1_x_at--101--5071Chr01:36692243..36692267 (25 bp)
GCAGCTCTATCACTTCTGATGTTCA
LOC_Os01g62790
Target Sequence 
GTATACTACCAACCGGCAAACTGCAGTGCATTACCAGAACAATAATCATCCACAGGCATATNNANCACGCAGCGGCAAAC
AACAGTTCATCACCAGAACCAGAACAATCAACAGGTGTATGCTGCAGGGAGGCAAACAGGAGGTCAGTACCAGAATACCC
AGCGTAGCAAGGAGAACACATCATATCGTCATTCAAATTGGCGAGCAGCAACTACATGGCACGAGCCAGTTTGTGGATGA
TTCTACAATGGAGAATGGCAGTAACGCTCTCAGACCGGCCTNACCATCAGCATCAGTTGATCATAACTGATGGTCCTANG
ATAGCAACAGATTATCTTTAGCTCTTGCCTGACAATATGTCAATATGCATCACATTTCGATTCCCTTAGGTCTCGACAAA
CAATATGTATGAGCTCATGAAATTTAGCGCAAGTTATTGCCAGCCAGCTCGTATGGNTGAGCGAGCCTGGGGCTTATGTG
CATTTTGAGATCTAGAAGATGTATTGCTGAACNTGCAGCTCTATCACTTCTGATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53372.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis