Browse Element(s) Details


Os.33896.1.S1_at

Description gb:NM_190588.1
DB_XREF= gi:34908259
GEN=P0446B05.19
TID=Os.33896.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446B05.19 (P0446B05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0446B05.19 (P0446B05.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g627902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33896.1.S1_at--519--10171Chr01:36691600..36691699 (25 bp)
TATACAAATACCTTACCAGCCAGAG
LOC_Os01g62790
Os.33896.1.S1_at--264--2251Chr01:36691605..36691704 (25 bp)
AAATACCTTACCAGCCAGAGGAGGA
LOC_Os01g62790
Os.33896.1.S1_at--757--8231NONE
GGCAAACAGGAGACGGAAACAAGAA
NONE
Os.33896.1.S1_at--1162--5231Chr01:36692438..36692462 (25 bp)
GAATCAAGCAGGAACATCAACAATG
NONE
Os.33896.1.S1_at--515--8171Chr01:36692448..36692472 (25 bp)
GGAACATCAACAATGCGCTCAACTT
NONE
Os.33896.1.S1_at--114--2231Chr01:36692457..36692481 (25 bp)
ACAATGCGCTCAACTTTAGCTGCAA
NONE
Os.33896.1.S1_at--914--4571Chr01:36692462..36692486 (25 bp)
GCGCTCAACTTTAGCTGCAAATTTG
NONE
Os.33896.1.S1_at--572--9671Chr01:36692466..36692490 (25 bp)
TCAACTTTAGCTGCAAATTTGACCA
NONE
Os.33896.1.S1_at--297--3111Chr01:36692481..36692505 (25 bp)
AATTTGACCATCACAGAACATCGGA
NONE
Os.33896.1.S1_at--418--8931Chr01:36692485..36692509 (25 bp)
TGACCATCACAGAACATCGGAACAT
NONE
Os.33896.1.S1_at--564--3551Chr01:36692489..36692513 (25 bp)
CATCACAGAACATCGGAACATGCAT
NONE
Target Sequence 
TATACAAATACCTTACCAGCCAGAGGAGGAAGCAGGTCAGGTCAGAGTCCACATGGGTATACTACCAACCGGCAAACTGC
AGTGCATTACCAGAACAATAATCATCCACAGGCATATAACACGCAGCGGCAAACAACAGTTCATCACCAGAACCAGAACA
ATCAACAGGTGTATGCTGCAGGGAGGCAAACAGGAGACGGAAACAAGAAATTGAATCAAGCAGGAACATCAACAATGCGC
TCAACTTTAGCTGCAAATTTGACCATCACAGAACATCGGAACATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis