Browse Element(s) Details


Os.27906.1.S1_a_at

Description gb:AK065949.1
DB_XREF= gi:32975967
TID=Os.27906.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein phosphatase 2C (P0446B05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046H22, full insert sequence.
FL= gb:AK065949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6276011/11Protein phosphatase 2C, putative, expressed
LOC_Os03g161701/11Protein phosphatase 2C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62730NANA1+36646856..36647065hypothetical protein
LOC_Os01g62740NANA1+36649897..36651381hypothetical protein
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0009408biological_processresponse to heat
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27906.1.S1_a_at--207--2371Chr01:36672531..36672555 (25 bp)
AAACCGAGAACGGAGGAGCCGCATC
LOC_Os01g62760
Os.27906.1.S1_a_at--846--9771Chr01:36672567..36672591 (25 bp)
TAAGCAAGGCGGAGTCCTCCGACAA
LOC_Os01g62760
Os.27906.1.S1_a_at--237--2871Chr01:36672572..36672596 (25 bp)
AAGGCGGAGTCCTCCGACAAGGCGT
LOC_Os01g62760
Os.27906.1.S1_a_at--106--1151Chr01:36672579..36672603 (25 bp)
AGTCCTCCGACAAGGCGTGCTCCGA
LOC_Os01g62760
Os.27906.1.S1_a_at--459--4691Chr01:36672605..36672629 (25 bp)
GCGGCCATGCTGCTGACGAAGTTGG
LOC_Os01g62760
Os.27906.1.S1_a_at--986--5872Chr01:36672643..36672667 (25 bp)
GAGCGCGGACAATGTCAGCGTCGTC
LOC_Os01g62760
Os.27906.1.S1_a_at--595--7671Chr01:36672685..36672709 (25 bp)
GGGATTGTGATTCTTGGCGCAATAT
LOC_Os01g62760
Os.27906.1.S1_a_at--574--8391Chr01:36672700..36672724 (25 bp)
GGCGCAATATTCTATGCTCCATGAT
LOC_Os01g62760
Os.27906.1.S1_a_at--436--9551Chr01:36672710..36672734 (25 bp)
TCTATGCTCCATGATTGCTTTCTTT
LOC_Os01g62760
Os.27906.1.S1_a_at--260--9891Chr01:36672809..36672833 (25 bp)
TACTACTAGCTCCTACCAAGATAAA
LOC_Os01g62760
Os.27906.1.S1_a_at--588--3711Chr01:36672814..36672838 (25 bp)
CTAGCTCCTACCAAGATAAATGAAT
LOC_Os01g62760
Target Sequence 
AAACCGAGAACGGAGGAGCCGCATCGGTGAAGGGGATAAGCAAGGCGGAGTCCTCCGACAAGGCGTGCTCCGACGCGGCC
ATGCTGCTGACGAAGTTGGCGCTGGCGCGGCGGAGCGCGGACAATGTCAGCGTCGTCGTCGTAGATCTCCGCCGGGGATT
GTGATTCTTGGCGCAATATTCTATGCTCCATGATTGCTTTCTTTCTTCTTCTTTTTTTTATTCTAAGTTAATTTTTCCCT
TCAAATTTCTTCCTTATTTCTCTGTTTAGTTTTAGTTCTACTACTAGCTCCTACCAAGATAAATGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27906.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis