Browse Element(s) Details


OsAffx.21742.1.S1_at

Description gb:NM_190587.1
DB_XREF= gi:34908257
GEN=P0446B05.18
TID=OsAffx.21742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446B05.18 (P0446B05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g627806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62750OsAffx.29419.2.S1_x_at11/111+36652532..36663378expressed protein
LOC_Os01g62750Os.52319.1.S1_x_at6/111+36652532..36663378expressed protein
LOC_Os01g62750Os.18939.1.S1_s_at2/111+36652532..36663378expressed protein
LOC_Os01g62760Os.27906.1.S1_a_at11/111+36670797..36672863Protein phosphatase 2C, putative, expressed
LOC_Os01g62770Os.49935.1.S1_at11/111+36672962..36676394expressed protein
LOC_Os01g62770OsAffx.11273.2.S1_at1/111+36672962..36676394expressed protein
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21742.1.S1_at--765--5271Chr01:36683346..36683370 (25 bp)
GAATGAAAGCTCTCTTTGCCATCTG
LOC_Os01g62780
OsAffx.21742.1.S1_at--978--9471Chr01:36683367..36683391 (25 bp)
TCTGCTTGCAACCTTTTTCCACAAA
LOC_Os01g62780
OsAffx.21742.1.S1_at--230--1811Chr01:36684057..36684081 (25 bp)
ACCCTTTCGGGTGATGTGATATCCA
LOC_Os01g62780
OsAffx.21742.1.S1_at--758--8671Chr01:36684071..36684095 (25 bp)
TGTGATATCCACTTACACGGGCCAG
LOC_Os01g62780
OsAffx.21742.1.S1_at--414--9811Chr01:36684084..36684108 (25 bp)
TACACGGGCCAGTTCAAACGAATAG
LOC_Os01g62780
OsAffx.21742.1.S1_at--1066--7991Chr01:36684124..36684148 (25 bp)
GGATGGCCAGATCATACAGCTTATT
LOC_Os01g62780
OsAffx.21742.1.S1_at--786--3131Chr01:36684862..36684886 (25 bp)
AATTATACTCGATAACGCCCGGCCA
NONE
OsAffx.21742.1.S1_at--324--7431Chr01:36684904..36684928 (25 bp)
GTGTTACATGCTACAGCGACCGAGA
NONE
OsAffx.21742.1.S1_at--464--9751Chr01:36684996..36685020 (25 bp)
TAATCACCAATCGTTACATGCTACA
NONE
OsAffx.21742.1.S1_at--529--3531Chr01:36685012..36685036 (25 bp)
CATGCTACAGCAACCGAGACAGAAG
NONE
OsAffx.21742.1.S1_at--15--7971Chr01:36685036..36685060 (25 bp)
GGATCATACCGGAATCAGCAGCAGA
NONE
Target Sequence 
GAATGAAAGCTCTCTTTGCCATCTGCTTGCAACCTTTTTCCACAAATTTTCCTCTATCGGCACCCTTTCGGGTGATGTGA
TATCCACTTACACGGGCCAGTTCAAACGAATAGAGGAGAACCCAAGTTGGATGGCCAGATCATACAGCTTATTTGTCAAA
GATCCAATTGAGAGACCTGATAATGCCGCTAGAGCGGTTGATTTGAAAGGCCTTGAGCGGATTGCTGGGGCCTTCACCGC
TGCTAATCCATCCAAGCACCAAGACAATACCAGAATTATACTCGATAACGCCCGGCCAGAAACTACAATCACCAAGTGTT
ACATGCTACAGCGACCGAGACAACGGCCAGAAACTACAATCACCAATTGTTACATGCTGCAGCAACCGAGACAACGGCCA
GAAACTATAATCACCAATCGTTACATGCTACAGCAACCGAGACAGAAGGATCATACCGGAATCAGCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis