Browse Element(s) Details


Os.28217.1.S1_at

Description gb:AK063080.1
DB_XREF= gi:32973098
TID=Os.28217.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28217 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446B05.22 (P0446B05.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-A02, full insert sequence.
FL= gb:AK063080.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6281011/11Regulator of chromosome condensation, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62780OsAffx.21742.2.S1_at11/111+36681358..36684876expressed protein
LOC_Os01g62780OsAffx.21742.1.S1_at6/111+36681358..36684876expressed protein
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28217.1.S1_at--1077--2451Chr01:36711578..36711684 (25 bp)
AACAAGTACGGACAGCTCGGTCTCG
LOC_Os01g62810
Os.28217.1.S1_at--397--7811Chr01:36711678..36711702 (25 bp)
GGTCTCGGCGATTCCATGGACAGAA
LOC_Os01g62810
Os.28217.1.S1_at--263--1431Chr01:36711699..36711723 (25 bp)
AGAAACGTGCCTTGCAGTGTTCCTG
LOC_Os01g62810
Os.28217.1.S1_at--483--311Chr01:36711731..36711755 (25 bp)
ATACCACCCACTGAATGTGTCGTGC
LOC_Os01g62810
Os.28217.1.S1_at--812--8871Chr01:36711802..36711826 (25 bp)
TGACGGCGAACAAACTTCCCTAGTT
LOC_Os01g62810
Os.28217.1.S1_at--478--10091Chr01:36711849..36711873 (25 bp)
TAGGCTTTCATCAAGGTGCGGCCGT
LOC_Os01g62810
Os.28217.1.S1_at--560--4711Chr01:36711866..36711890 (25 bp)
GCGGCCGTGTTGCATTTCGTGTATA
LOC_Os01g62810
Os.28217.1.S1_at--824--10151Chr01:36711967..36711991 (25 bp)
TATCGCACCGCGTATACAGTTGGGT
LOC_Os01g62810
Os.28217.1.S1_at--999--7391Chr01:36712030..36712054 (25 bp)
GTGATGACTGTGTCCATGCTTCGTC
LOC_Os01g62810
Os.28217.1.S1_at--45--10631Chr01:36712049..36712073 (25 bp)
TTCGTCTTGCATTTTCCAGTTGCTA
LOC_Os01g62810
Os.28217.1.S1_at--569--9791Chr01:36712115..36712139 (25 bp)
TAACCGGAACGCTGATTACGCTAGA
LOC_Os01g62810
Target Sequence 
AACAAGTACGGACAGCTCGGTCTCGGCGATTCCATGGACAGAAACGTGCCTTGCAGTGTTCCTGTCGACGCATACCACCC
ACTGAATGTGTCGTGCGGTTGGTGGCACACCTTGGTGCTCGCGGAGTCCCCTACTTAAAACCTGACGGCGAACAAACTTC
CCTAGTTGACAATTTTGTTAGGAGTTTGGTAGGCTTTCATCAAGGTGCGGCCGTGTTGCATTTCGTGTATATACATGGCA
GTGCATGCAGATATGGTGTATTCATTCTTTCCGGTGCGCTNTTCAACGGGCAACGTACACAAGCTTGTATCGCACCGCGT
ATACAGTTGGGTAGGAATGGCTGTAAGGCCNTGTGCTNGAAAGNGCATGCGGTGATGACTGTGTCCATGCTTCGTCTTGC
ATTTTCCAGTTGCTATATGCAGACGAAATTAACCGGTTGCTATATGCAGACGAAATTAACCGGAACGCTGATTACGCTAG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28217.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis