Browse Element(s) Details


Os.19137.1.S1_at

Description gb:AK071164.1
DB_XREF= gi:32981187
TID=Os.19137.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19137 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081P19, full insert sequence.
FL= gb:AK071164.1 gb:AK104027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6285011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19137.1.S1_at--1039--4971Chr01:36727127..36727151 (25 bp)
GCATCGATGGGACTACAGGCACTCT
LOC_Os01g62850
Os.19137.1.S1_at--1076--2111Chr01:36727113..36727137 (25 bp)
ACAGGCACTCTGGAGCTTGGGACTT
LOC_Os01g62850
Os.19137.1.S1_at--787--3631Chr01:36727087..36727111 (25 bp)
CTTGCCTTGATTGCTATGCCTTGAA
LOC_Os01g62850
Os.19137.1.S1_at--546--5571Chr01:36727056..36727080 (25 bp)
GAAAGATCTCCACAGTGCTGTTCTC
LOC_Os01g62850
Os.19137.1.S1_at--996--5011Chr01:36726124..36726148 (25 bp)
GCAGGTGTAGTTGTTCTCTTCGATA
LOC_Os01g62850
Os.19137.1.S1_at--673--2071Chr01:36726096..36726120 (25 bp)
ACATATACGCTTGCAGGAATCCCCA
LOC_Os01g62850
Os.19137.1.S1_at--1017--291Chr01:36726043..36726067 (25 bp)
ATAGCATGTGCTTTTCTTTCTTGGG
LOC_Os01g62850
Os.19137.1.S1_at--943--10551Chr01:36726026..36726050 (25 bp)
TTCTTGGGCGTTTAGTGCCACATCT
LOC_Os01g62850
Os.19137.1.S1_at--686--471Chr01:36726005..36726029 (25 bp)
ATCTGCTCTCGTAATGTTTTGGCTC
LOC_Os01g62850
Os.19137.1.S1_at--255--8491Chr01:36725986..36726010 (25 bp)
TGGCTCCTCGCTTCATTGTGAATAA
LOC_Os01g62850
Os.19137.1.S1_at--525--2691Chr01:36725857..36725881 (25 bp)
AAGCTCCATGAACTCTGTTTCCGAG
LOC_Os01g62850
Target Sequence 
GCATCGATGGGACTACAGGCACTCTGGAGCTTGGGACTTGCTTGCCTTGATTGCTATGCCTTGAAATTCAAGAAAGATCT
CCACAGTGCTGTTCTCCTGAGCTTATTTGTTGTTGGCGACTGGGTAACAGCAATCCTGTCGTTCGCGGCATCATGCTCAG
CAGCAGGTGTAGTTGTTCTCTTCGATAGGGACATATACGCTTGCAGGAATCCCCAACTCCCTTGTGGAAGATTTGAACTA
GCCATAGCATGTGCTTTTCTTTCTTGGGCGTTTAGTGCCACATCTGCTCTCGTAATGTTTTGGCTCCTCGCTTCATTGTG
AATAAATTTGTACAACNTCTGTCTGTAGCTCCCCTCTGTTTGATCCCTTCTCTGTATACGAACTAATTTTTGAAGACGAC
AACACAACAGAAGTTCTGAAATGTCATACAAGCTCCATGAACTCTGTTTCCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19137.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis