Browse Element(s) Details


Os.5560.1.S1_at

Description gb:AK103729.1
DB_XREF= gi:32988938
TID=Os.5560.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative aldose reductase (P0005H10.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033138E18, full insert sequence.
FL= gb:AK103729.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6287011/11oxidoreductase, aldo/keto reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5560.1.S1_at--133--9071Chr01:36739938..36739962 (25 bp)
TGCATAACTTTTGCCAGTCAACGGG
LOC_Os01g62870
Os.5560.1.S1_at--506--8171Chr01:36740151..36740175 (25 bp)
GGAACCCATCATTATCTCGATTGCA
LOC_Os01g62870
Os.5560.1.S1_at--254--2391Chr01:36740189..36740213 (25 bp)
AAACTCCTGCACAAGTGGCGCTGCG
LOC_Os01g62870
Os.5560.1.S1_at--252--7611Chr01:36741162..36741186 (25 bp)
GGGCAACTTCATTGTCAATCCACAG
LOC_Os01g62870
Os.5560.1.S1_at--633--9211Chr01:36741180..36741204 (25 bp)
TCCACAGAGCGTTTACAAGACCCAT
LOC_Os01g62870
Os.5560.1.S1_at--1159--10411Chr01:36741228..36741252 (25 bp)
TTAGGAGTTCCGTCAGTGCCAATCA
LOC_Os01g62870
Os.5560.1.S1_at--810--7271Chr01:36741243..36741267 (25 bp)
GTGCCAATCACGCTTATTGAACATT
LOC_Os01g62870
Os.5560.1.S1_at--70--10511Chr01:36741294..36741318 (25 bp)
TTAATGTTTGGTGGTTCAGTGCTCT
LOC_Os01g62870
Os.5560.1.S1_at--947--5891Chr01:36741320..36741344 (25 bp)
GAGCTCCTCTGTCCTATGTAATGAA
LOC_Os01g62870
Os.5560.1.S1_at--1091--4951Chr01:36741359..36741383 (25 bp)
GCATCATGTTCCCTTGGAAATCCTT
LOC_Os01g62870
Os.5560.1.S1_at--1090--2271Chr01:36741376..36741400 (25 bp)
AAATCCTTTTTACTGCTCCTCTGAA
LOC_Os01g62870
Target Sequence 
TGCATAACTTTTGCCAGTCAACGGGCATTCATCTTTCTGCATACTCGCCGCTAGGTTCACCTNGGTTCAACATTTATGAA
CGGCAATGTCCTTAAGGAACCCATCATTATCTCGATTGCAGAGAAGCTTGGCAAAACTCCTGCACAAGTGGCGCTGCGCT
GGAACATTCAGATGGGTCACAGTGTACTCCCAAAAAGTGTGAGTGAAGAAAGGATAAAGCAGAACTTAGATGTTTATGAC
TGGTCTATTCCAGAGGACTTGCTTGCTAAGTTCTCGGAGATTAAGCAGGTTAGGCTGCTCAGGGGCAACTTCATTGTCAA
TCCACAGAGCGTTTACAAGACCCATGAGGAGCTCTGGGACNGGGAAATTTAGGAGTTCCGTCAGTGCCAATCACGCTTAT
TGAACATTGATTGTATTAGCAAATTTACGCATATTTAATGTTTGGTGGTTCAGTGCTCTCGAGCTCCTCTGTCCTATGTA
ATGAAGTGCTTGATCAGCAGCATCATGTTCCCTTGGAAATCCTTTTTACTGCTCCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis