Browse Element(s) Details


Os.33244.1.S2_at

Description gb:AK069425.1
DB_XREF= gi:32979449
TID=Os.33244.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33244 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative delta l pyrroline-5-carboxylate synthetase (P0005H10.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023019K03, full insert sequence.
FL= gb:AK069425.1 gb:AK101230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6290011/11Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006561biological_processproline biosynthesis
GO:0009269biological_processresponse to desiccation
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
GO:0017084molecular_functiondelta1-pyrroline-5-carboxylate synthetase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33244.1.S2_at--64--2651Chr01:36767135..36767159 (25 bp)
AACCATCCCGTATCTGATCTGTTTA
LOC_Os01g62900
Os.33244.1.S2_at--92--5071Chr01:36767245..36767269 (25 bp)
GCAGCTATTCGTAATGCATCCCATT
LOC_Os01g62900
Os.33244.1.S2_at--233--9651Chr01:36767316..36767340 (25 bp)
TCAGGGCCTCTAACCATGACAGATG
LOC_Os01g62900
Os.33244.1.S2_at--881--6471Chr01:36767344..36767368 (25 bp)
GATACTCTCGTATCAGTGTCAACAT
LOC_Os01g62900
Os.33244.1.S2_at--854--9871Chr01:36767390..36767414 (25 bp)
TACATCCATGTCTGGTATCCACAGT
LOC_Os01g62900
Os.33244.1.S2_at--825--2131Chr01:36767410..36767434 (25 bp)
ACAGTACCATCACCATTCCAAATGT
LOC_Os01g62900
Os.33244.1.S2_at--971--7931Chr01:36767439..36767463 (25 bp)
GGATACCGTTACTACTACTGATGTG
LOC_Os01g62900
Os.33244.1.S2_at--130--6531Chr01:36767508..36767532 (25 bp)
GATTCCAATTCTCTCCAAACAAACA
LOC_Os01g62900
Os.33244.1.S2_at--6--9671Chr01:36767535..36767559 (25 bp)
TCAGCAATCTTTTGAGGTACCTCCT
LOC_Os01g62900
Os.33244.1.S2_at--715--2231Chr01:36767609..36767633 (25 bp)
ACAATTCCTACGTCTTCAGTGGTTA
LOC_Os01g62900
Os.33244.1.S2_at--255--9751Chr01:36767668..36767692 (25 bp)
TAATAGAGTCCGCAGCATCTTCACC
LOC_Os01g62900
Target Sequence 
AACCATCCCGTATCTGATCTGTTTAGATAAAGACAGTTATATTAGAAATCGCCAATAAGTCTCGGACGAAAATTCCCAGC
ATTTCACAACTTAAGAAGTTCAGAATTCTAGCAGCTATTCGTAATGCATCCCATTGCAGTATTGCATAACAAATTACAGA
GATGAATATCAATCTCCCAGCTCAGGGCCTCTAACCATGACAGATGGTAGATACTCTCGTATCAGTGTCAACATTAGGTG
GGGATATTACAATATTACATCCATGTCTGGTATCCACAGTACCATCACCATTCCAAATGTGTCAGGATACCGTTACTACT
ACTGATGTGTTAAACAGGGATCCATCACAAATGTATCAAAATTGTCTGGCAGAGATTCCAATTCTCTCCAAACAAACAAC
TCAGCAATCTTTTGAGGTACCTCCTGAAAGACTGAGTCATGATGGCTAGTCTAATCAATATGTTAGGCTATACAACAATT
CCTACGTCTTCAGTGGTTATTCTGTATAAATCAGTAAAGCTCCCAAAAAACATTAATAGAGTCCGCAGCATCTTCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33244.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis