Browse Element(s) Details


Os.9242.2.S1_x_at

Description gb:NM_190592.1
DB_XREF= gi:34908267
GEN=P0446B05.23
TID=Os.9242.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9242 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446B05.23 (P0446B05.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0446B05.23 (P0446B05.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6282011/11Transcription initiation factor TFIID subunit A family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62790Os.53372.1.S1_x_at11/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_x_at8/111+36686558..36692293expressed protein
LOC_Os01g62790Os.53372.2.S1_at7/111+36686558..36692293expressed protein
LOC_Os01g62790Os.33896.1.S1_at2/111+36686558..36692293expressed protein
LOC_Os01g62800Os.34775.1.S1_at11/111+36695095..36700788dehydration-responsive family protein, putative, expressed
LOC_Os01g62810Os.28217.1.S1_at11/111+36706484..36712238Regulator of chromosome condensation, putative, expressed
LOC_Os01g62820Os.9242.1.A1_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62820Os.9242.2.S1_x_at11/111+36712474..36717260Transcription initiation factor TFIID subunit A family protein, expressed
LOC_Os01g62830Os.23635.1.S1_at11/111+36719001..36719713expressed protein
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006352biological_processtranscription initiation
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005669cellular_componenttranscription factor TFIID complex
GO:0003713molecular_functiontranscription coactivator activity
GO:0016986molecular_functiontranscription initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9242.2.S1_x_at--572--2151Chr01:36715122..36715146 (25 bp)
ACAGCTACCTGGATCGTCGACAAAT
LOC_Os01g62820
Os.9242.2.S1_x_at--402--2291Chr01:36715084..36715108 (25 bp)
AAATGTCCCTTCCTCAGAAACAGCA
LOC_Os01g62820
Os.9242.2.S1_x_at--532--651Chr01:36715037..36715061 (25 bp)
ATGCAATCATCGCTGGGATCACCTG
LOC_Os01g62820
Os.9242.2.S1_x_at--900--10511Chr01:36714897..36714985 (25 bp)
TTCAACAGCACTTTTACAGCAGCAA
LOC_Os01g62820
Os.9242.2.S1_x_at--498--5051Chr01:36714879..36714903 (25 bp)
GCAGCAACACATTCTACAGCAACTT
LOC_Os01g62820
Os.9242.2.S1_x_at--73--1011Chr01:36714833..36714857 (25 bp)
AGGATATCAGCATCTGGTTCCCAGA
LOC_Os01g62820
Os.9242.2.S1_x_at--1039--2611Chr01:36714800..36714824 (25 bp)
AACCTGACAGGATCACAACCGGGCA
LOC_Os01g62820
Os.9242.2.S1_x_at--320--3991Chr01:36714781..36714805 (25 bp)
CGGGCACTCCTTTATCAGGTGGAAC
LOC_Os01g62820
Os.9242.2.S1_x_at--565--6511Chr01:36714449..36714710 (25 bp)
GATTTGGTTTCACAGGTAGATCCCC
LOC_Os01g62820
Os.9242.2.S1_x_at--620--5691Chr01:36714193..36714398 (25 bp)
GACTTCATTGATTCGGTGACTGCAT
LOC_Os01g62820
Os.9242.2.S1_x_at--560--10631Chr01:36714168..36714192 (25 bp)
TTGCGTGTACCCTTGCGAAGCATAG
LOC_Os01g62820
Target Sequence 
ACAGCTACCTGGATCGTCGACAAATGGGCCGATGGCACAAATGTCCCTTCCTCAGAAACAGCAGCAGGCAGCATGGTTAA
AACAAATGCAATCATCGCTGGGATCACCTGTTTCTCCACAACAATTTCAGCATCAACAAAGGATGCTATTAATACATCAA
CTTCAACAGCACTTTTACAGCAGCAACACATTCTACAGCAACTTCAGCAACAACAACAATCTCCAAGGATATCAGCATCT
GGTTCCCAGAAGTCCATGAACCTGACAGGATCACAACCGGGCACTCCTTTATCAGGTGGAACTATGACTGGTGGAAGTGC
AAGTCAAGGAGCAGAAGTAACTAATCAACTTCTTGGGAAGAGAAAAATACAAGATTTGGTTTCACAGGTAGATCCCCTGG
GCAAGGTTGATCCAGAAGTGGAAGATTTGCTTTTGGAGATTGCTGATGACTTCATTGATTCGGTGACTGCATTTGCGTGT
ACCCTTGCGAAGCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9242.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis