Browse Element(s) Details


OsAffx.11702.1.S1_at

Description tigr:9629.m06187
TID=OsAffx.11702.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6264011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62660Os.10050.1.S1_at11/111+36614131..36616492myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g62670Os.9677.2.S1_x_at11/111+36622963..36625449Avr9/Cf-9 rapidly elicited protein 137, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11702.1.S1_at--955--811Chr01:36601120..36601144 (25 bp)
ATGGTGCTCAGCTCCCCAGATGGGC
LOC_Os01g62640
OsAffx.11702.1.S1_at--177--7591Chr01:36601099..36601123 (25 bp)
GGGCTCGTCCTCTGCGAGCTGATGA
LOC_Os01g62640
OsAffx.11702.1.S1_at--744--3771Chr01:36601090..36601114 (25 bp)
CTCTGCGAGCTGATGATGCCCGGCG
LOC_Os01g62640
OsAffx.11702.1.S1_at--56--7211Chr01:36601036..36601060 (25 bp)
GTCGCGGGACGCATCTTCGCGGTCA
LOC_Os01g62640
OsAffx.11702.1.S1_at--496--431Chr01:36601024..36601048 (25 bp)
ATCTTCGCGGTCAGGGTCGTCGACG
LOC_Os01g62640
OsAffx.11702.1.S1_at--301--5751Chr01:36601003..36601027 (25 bp)
GACGGGACCGGCAAGCTCGTACGCG
LOC_Os01g62640
OsAffx.11702.1.S1_at--288--5991Chr01:36600968..36600992 (25 bp)
GAGACGGCTAGGGTCCGCTTGCCAC
LOC_Os01g62640
OsAffx.11702.1.S1_at--180--3931Chr01:36600933..36600957 (25 bp)
CGGCCGCTGGGAACTTGTTGTCGTT
LOC_Os01g62640
OsAffx.11702.1.S1_at--1090--7611Chr01:36600925..36600949 (25 bp)
GGGAACTTGTTGTCGTTGCGCTATC
LOC_Os01g62640
OsAffx.11702.1.S1_at--307--2071Chr01:36600921..36600945 (25 bp)
ACTTGTTGTCGTTGCGCTATCGGGA
LOC_Os01g62640
OsAffx.11702.1.S1_at--844--4851Chr01:36600906..36600930 (25 bp)
GCTATCGGGACTGCGTCATCCCTAA
LOC_Os01g62640
Target Sequence 
ATGGTGCTCAGCTCCCCAGATGGGCTCGTCCTCTGCGAGCTGATGATGCCCGGCGGCCGAAGCGAGTACCGCCTCGGCCG
CCGCGTCGCGGGACGCATCTTCGCGGTCAGGGTCGTCGACGGGACCGGCAAGCTCGTACGCGGCGGCGTGCTGAGACGGC
TAGGGTCCGCTTGCCACCGGTTCGCTGCGGCCGCTGGGAACTTGTTGTCGTTGCGCTATCGGGACTGCGTCATCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11702.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis