Browse Element(s) Details


Os.6108.1.S1_at

Description gb:AK071686.1
DB_XREF= gi:32981709
TID=Os.6108.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406G08.29 (P0406G08.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023109M13, full insert sequence.
FL= gb:AK070434.1 gb:AK071686.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6262011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62584OsAffx.28855.2.S1_at11/111+36557331..36560405expressed protein
LOC_Os01g62584OsAffx.28855.3.S1_x_at3/111+36557331..36560405expressed protein
LOC_Os01g62600OsAffx.21744.2.S1_x_at11/111+36563691..36565915laccase, putative
LOC_Os01g62600Os.46813.2.S1_x_at1/111+36563691..36565915laccase, putative
LOC_Os01g62610OsAffx.11701.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610OsAffx.11701.1.S1_s_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62610Os.54469.1.S1_at11/111+36580424..36583805FK506-binding protein 4, putative, expressed
LOC_Os01g62620Os.6108.1.S1_at11/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62620Os.6108.2.S1_x_at9/111+36584284..36588593DHHC zinc finger domain containing protein, expressed
LOC_Os01g62630Os.42450.1.A1_at11/111+36594912..36596586Eukaryotic aspartyl protease family protein, expressed
LOC_Os01g62640OsAffx.11702.1.S1_at11/111+36600875..36601582Zinc finger, C3HC4 type family protein
LOC_Os01g62650Os.27684.1.S2_at11/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed
LOC_Os01g62650Os.27684.1.S1_at10/111+36605802..36613236Pumilio-family RNA binding repeat containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6108.1.S1_at--582--8571Chr01:36584743..36584767 (25 bp)
TGGTTGCCTATCCAAGTGTGAAATG
LOC_Os01g62620
Os.6108.1.S1_at--331--7471Chr01:36584728..36584752 (25 bp)
GTGTGAAATGTGCTATTCTCGCAAT
LOC_Os01g62620
Os.6108.1.S1_at--292--5191Chr01:36584708..36584732 (25 bp)
GCAATAGCATTTGATAACCCTTCAT
LOC_Os01g62620
Os.6108.1.S1_at--274--5231Chr01:36584679..36584703 (25 bp)
GAATAGCGTTTGTCAATGTCTTGAA
LOC_Os01g62620
Os.6108.1.S1_at--931--6171Chr01:36584582..36584606 (25 bp)
GAGGAGCTGGATATTCCTCCAGGCT
LOC_Os01g62620
Os.6108.1.S1_at--506--3612Chr05:25211270..25211294 (24 bp)
CTTGGTTTTCTTTTTGCTTTGCAAT
NONE
Os.6108.1.S1_at--125--4891Chr01:36584504..36584528 (25 bp)
GCTTTGCAATTTTCGACATACTTGA
LOC_Os01g62620
Os.6108.1.S1_at--373--10771Chr01:36584483..36584507 (25 bp)
TTGATGAGAAGAGTCGCCAGCGCCT
LOC_Os01g62620
Os.6108.1.S1_at--591--5331Chr01:36584426..36584450 (25 bp)
GAAGTCCAAATACATGAGTGCCTCT
LOC_Os01g62620
Os.6108.1.S1_at--471--6111Chr01:36584411..36584435 (25 bp)
GAGTGCCTCTTGTAAAGTTCAATGT
LOC_Os01g62620
Os.6108.1.S1_at--727--2011Chr01:36584364..36584388 (25 bp)
ACTAATATTGCGTTGTCCGGTCATA
LOC_Os01g62620
Target Sequence 
TGGTTGCCTATCCAAGTGTGAAATGTGCTATTCTCGCAATAGCATTTGATAACCCTTCATAAAGGAATAGCGTTTGTCAA
TGTCTTGAAACTCTTGCATCAAGAGTTTGTACTTGATGTGATCAAATGTGTAAATGACACTCCACGTGTAAGATACAGGA
AGAGGAGCTGGATATTCCTCCAGGCTCCAAGGATCTATATGGATTTTGGAGCTAGAAATGTTAACTTGGTTTTCTTTTTG
CTTTGCAATTTTCGACATACTTGATGAGAAGAGTCGCCAGCGCCTCTACNGATCTAGAGTGGTTGTATTCATACACAGAA
GTCCAAATACATGAGTGCCTCTTGTAAAGTTCAATGTCTTGTATTGTTATTTTTTGGAGACTAATATTGCGTTGTCCGGT
CATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis