Browse Element(s) Details


OsAffx.9554.1.S1_at

Description tigr:9629.m06174
TID=OsAffx.9554.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY DNA -binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6251011/11WRKY DNA binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62490Os.9615.1.S1_at11/111+36504141..36506976Multicopper oxidase family protein, expressed
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein
LOC_Os01g62520Os.54691.1.S1_x_at2/111+36534712..36537496Zinc knuckle family protein
LOC_Os01g62530OsAffx.11698.1.S1_at11/111+36539139..36540074hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_s_at11/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.15567.2.S1_at10/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.20192.1.S1_at3/111+36541182..36543364hypothetical protein
LOC_Os01g62540OsAffx.14237.1.S1_at3/111+36541182..36543364hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0010214biological_processseed coat development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9554.1.S1_at--415--7611Chr01:36518477..36518496 (20 bp)
GGGCAAACCAGAGCTTATGGAGTTA
LOC_Os01g62510
OsAffx.9554.1.S1_at--1057--2011Chr01:36516080..36516104 (25 bp)
ACTACAAGTGCACCAGCTCCCGATG
LOC_Os01g62510
OsAffx.9554.1.S1_at--918--5071Chr01:36516056..36516080 (25 bp)
GCAGCGCCAAGAAGCACGTCGAGAA
LOC_Os01g62510
OsAffx.9554.1.S1_at--447--1451Chr01:36516035..36516059 (25 bp)
AGAAGTCCACCGATGACCCGGAGAT
LOC_Os01g62510
OsAffx.9554.1.S1_at--745--3951Chr01:36516017..36516041 (25 bp)
CGGAGATGCTCATCGTCACGTACGA
LOC_Os01g62510
OsAffx.9554.1.S1_at--521--4511Chr01:36515932..36515956 (25 bp)
GCCGACGTCGGTAGTGGGCTTCTCC
LOC_Os01g62510
OsAffx.9554.1.S1_at--299--2751Chr01:36515850..36515874 (25 bp)
AAGAACTATGTCAGGGCGGCCTTCT
LOC_Os01g62510
OsAffx.9554.1.S1_at--547--8311Chr01:36515786..36515810 (25 bp)
GGCTACGGCCAGAGTGGCCACAAGA
LOC_Os01g62510
OsAffx.9554.1.S1_at--731--8451Chr01:36515772..36515796 (25 bp)
TGGCCACAAGACGATGGGACGTCGT
LOC_Os01g62510
OsAffx.9554.1.S1_at--436--1891Chr01:36515754..36515778 (25 bp)
ACGTCGTGTGACGTCGCCGAGTTAC
LOC_Os01g62510
OsAffx.9554.1.S1_at--1023--5831Chr01:36515581..36515605 (25 bp)
GACCATATGGTCGTGCCTGGACTGG
LOC_Os01g62510
Target Sequence 
GGGCAAACCAGAGCTTATGGAGTTACTACAAGTGCACCAGCTCCCGATGCAGCGCCAAGAAGCACGTCGAGAAGTCCACC
GATGACCCGGAGATGCTCATCGTCACGTACGAGGGGTCGCACCATCACGGCCCGCAGCCGCTCTTCCCGCCGCACATCGC
CCAGCCACCGCCGCCGACGTCGGTAGTGGGCTTCTCCGCCGCCTCCGGCGCTGGCCCGCCGCCGTCGTCGCCCGCGGCGG
CGGCAAGGAAGAGGAAGAACTATGTCAGGGCGGCCTTCTCGCCGACGACGTCCGAGGACGACGGCGACGGCGCCGGCCGG
CTACGGCCAGAGTGGCCACAAGACGATGGGACGTCGTGTGACGTCGCCGAGTTACGACGACGTGGCGACGCGGAGCACGC
CGCGCCGCGTCGTGTCGCGACGGATCGCTCGTGCGACGATGGCGGCGGCGGCGGCTCGACCTCGGCCTCGTCGTCCGTGG
CGCGCGCTGACGCCGCTACGGCGCTGTCCTCTGACTCGCCGCCGACCATATGGTCGTGCCTGGACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis