Browse Element(s) Details


OsAffx.21751.1.S1_at

Description gb:NM_190553.1
DB_XREF= gi:34908189
GEN=P0406G08.9
TID=OsAffx.21751.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0406G08.9 (P0406G08.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6246911/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62490Os.9615.1.S1_at11/111+36504141..36506976Multicopper oxidase family protein, expressed
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed
LOC_Os01g62510OsAffx.9554.1.S1_at11/111+36515551..36518530WRKY DNA binding domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21751.1.S1_at--480--2091Chr01:36491928..36491952 (25 bp)
ACATAACACGTCATTTTCGCCTTGA
LOC_Os01g62469
OsAffx.21751.1.S1_at--952--2171Chr01:36491923..36491947 (25 bp)
ACACGTCATTTTCGCCTTGAAGGAG
LOC_Os01g62469
OsAffx.21751.1.S1_at--851--7931Chr01:36491602..36491626 (25 bp)
GGATGTTACACATGATTACGGAGGG
LOC_Os01g62469
OsAffx.21751.1.S1_at--657--5511Chr01:36491568..36491592 (25 bp)
GAAAATTGCTCCTGTAGTTCTTCGA
LOC_Os01g62469
OsAffx.21751.1.S1_at--529--10051Chr01:36491554..36491578 (25 bp)
TAGTTCTTCGAGTTCACGAATCAAG
LOC_Os01g62469
OsAffx.21751.1.S1_at--660--1211Chr01:36491544..36491568 (25 bp)
AGTTCACGAATCAAGTCTCCAGAGA
LOC_Os01g62469
OsAffx.21751.1.S1_at--592--2851Chr01:36491532..36491556 (25 bp)
AAGTCTCCAGAGAAGACGCCGTATG
LOC_Os01g62469
OsAffx.21751.1.S1_at--853--1351Chr01:36491524..36491548 (25 bp)
AGAGAAGACGCCGTATGACGATGAC
LOC_Os01g62469
OsAffx.21751.1.S1_at--1102--10631Chr01:36491488..36491512 (25 bp)
TTCGCCGCTCAGCTATCTCTTATAC
LOC_Os01g62469
OsAffx.21751.1.S1_at--51--9671Chr01:36491480..36491504 (25 bp)
TCAGCTATCTCTTATACGCCTGCGA
LOC_Os01g62469
OsAffx.21751.1.S1_at--741--10411Chr01:36491469..36491493 (25 bp)
TTATACGCCTGCGACTGCGAGACGC
LOC_Os01g62469
Target Sequence 
ACATAACACGTCATTTTCGCCTTGAAGGAGGAGATTTGGATGTTACACATGATTACGGAGGGAAAAATCCAGAAAATTGC
TCCTGTAGTTCTTCGAGTTCACGAATCAAGTCTCCAGAGAAGACGCCGTATGACGATGACGGCCGCCGTGCTTCGCCGCT
CAGCTATCTCTTATACGCCTGCGACTGCGAGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis