Browse Element(s) Details


Os.11866.1.S1_at

Description gb:AK119896.1
DB_XREF= gi:37989519
TID=Os.11866.1
CNT=25
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11866 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0406G08.7 (P0406G08.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C06, full insert sequence.
FL= gb:AK119896.1 gb:AK102593.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6246011/11SCARECROW, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed
LOC_Os01g62469OsAffx.21751.1.S1_at11/111+36491268..36491989NA
LOC_Os01g62480Os.12346.1.S1_at11/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62480Os.54525.1.S1_x_at1/111+36492802..36495788Multicopper oxidase family protein, expressed
LOC_Os01g62490Os.9615.1.S1_at11/111+36504141..36506976Multicopper oxidase family protein, expressed
LOC_Os01g62500Os.33529.1.S1_at11/111+36509312..36514823AFG3-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11866.1.S1_at--499--1051Chr01:36487777..36487801 (25 bp)
AGGGTTGGGTTCAAGCAGTTGCCAT
LOC_Os01g62460
Os.11866.1.S1_at--117--1531Chr01:36487790..36487814 (25 bp)
AGCAGTTGCCATTGAACCAGGATAT
LOC_Os01g62460
Os.11866.1.S1_at--756--9611Chr01:36487862..36487886 (25 bp)
TCATCGATGAGGACAACAGGTGGTT
LOC_Os01g62460
Os.11866.1.S1_at--14--2331Chr01:36487900..36487924 (25 bp)
AAAGGGCGCATTTTGTTCGCACTGT
LOC_Os01g62460
Os.11866.1.S1_at--389--6711Chr01:36487914..36487938 (25 bp)
GTTCGCACTGTCGACATGGAAGCCA
LOC_Os01g62460
Os.11866.1.S1_at--525--4931Chr01:36487959..36487983 (25 bp)
GCTTGTTCAGCTCTAATTATTGCAT
LOC_Os01g62460
Os.11866.1.S1_at--572--7771Chr01:36488029..36488053 (25 bp)
GGACCGATTGTTCCTGGTAGGCAAT
LOC_Os01g62460
Os.11866.1.S1_at--610--7891Chr01:36488129..36488153 (25 bp)
GGTTCATCTCTGTCCGTACATAAGA
LOC_Os01g62460
Os.11866.1.S1_at--959--3571Chr01:36488196..36488220 (25 bp)
CATTATTGTTGCTTCCGACGGGAAC
LOC_Os01g62460
Os.11866.1.S1_at--685--5831Chr01:36488266..36488290 (25 bp)
GACCTTGGGTTGTCTTATGTATGGA
LOC_Os01g62460
Os.11866.1.S1_at--367--10811Chr01:36488328..36488352 (25 bp)
TTGTCACTAAGTTCTGGTTCTGGAT
LOC_Os01g62460
Target Sequence 
AGGGTTGGGTTCAAGCAGTTGCCATTGAACCAGGATATGATGAAGCGTGCGCGGGAGAAGGTCAGGTGCTACCACAAGGA
CTTCATCATCGATGAGGACAACAGGTGGTTACTACAAGGATGGAAAGGGCGCATTTTGTTCGCACTGTCGACATGGAAGC
CAGATAATCGATCATCTTCATAGCTTGTTCAGCTCTAATTATTGCATGATATTGTAAATGTAGACCTGTTCATATTTTTT
TGGGGGGCATTTGGACCGATTGTTCCTGGTAGGCAATATATTGCTAGGTATGTTATTTGAACAACCNAAGTAATGGGAAA
CTTCTGCTTAGGAATTGTCTTATATGATGATCTGGTTCATCTCTGTCCGTACATAAGATGAACNCGCCTGTTCCTAGAAT
CTCTGCACANTTTGTTGTGATCATTATTGTTGCTTCCGACGGGAACANGTTGGTTCNATTTTGGTGGAGCTGCTAGATAT
GTTGAAGTTGTAGACCTTGGGTTGTCTTATGTATGGATGANCCTTGTACAGTATTTCTTCCAAACANTTCAGTACTTGTC
ACTAAGTTCTGGTTCTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11866.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis