Browse Element(s) Details


Os.22076.1.S1_a_at

Description gb:U95135.1
DB_XREF= gi:2920836
GEN=Os-FIERG1
TID=Os.22076.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.22076 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative FIERG1 protein (P0406G08.2), mRNA
DEF=Oryza sativa fungal elicitor immediate early responsive (Os-FIERG1) mRNA, complete cds.
FL= gb:U95136.1 gb:U95135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6243011/11Elicitor-responsive protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62400Os.55656.1.S1_at9/111+36444018..36445236hypothetical protein
LOC_Os01g62410Os.38177.1.S1_at11/111+36449635..36455336Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g62420Os.12423.1.S1_at11/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62420Os.11197.2.S1_x_at1/111+36456283..36459568Triosephosphate isomerase, cytosolic, putative, expressed
LOC_Os01g62430Os.22076.1.S1_a_at11/111+36462670..36464140Elicitor-responsive protein 1, putative, expressed
LOC_Os01g62440Os.13498.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.13498.2.S1_x_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440OsAffx.2388.1.S1_at11/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62440Os.52574.2.S1_x_at1/111+36465551..36473132RNB-like protein, expressed
LOC_Os01g62450NANA1+36481330..36481541hypothetical protein
LOC_Os01g62460Os.11866.1.S1_at11/111+36485157..36488383SCARECROW, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22076.1.S1_a_at--982--7411Chr01:36463179..36463203 (25 bp)
GTGTTCAAGTTCCAGATCAACTCCA
LOC_Os01g62430
Os.22076.1.S1_a_at--210--8391Chr01:36463208..36463232 (25 bp)
GGCGACCGGGCAGCACAAGCTCTTT
LOC_Os01g62430
Os.22076.1.S1_a_at--973--2211Chr01:36463222..36463246 (25 bp)
ACAAGCTCTTTCTGCGGCTCATGGA
LOC_Os01g62430
Os.22076.1.S1_a_at--619--10311Chr01:36463230..36463254 (25 bp)
TTTCTGCGGCTCATGGACCACGACA
LOC_Os01g62430
Os.22076.1.S1_a_at--464--1831Chr01:36463249..36463273 (25 bp)
ACGACACCTTCTCACGGGACGACTT
LOC_Os01g62430
Os.22076.1.S1_a_at--112--5691Chr01:36463269..36463289 (21 bp)
GACTTCCTCGGCGAAGCAACGATCA
LOC_Os01g62430
Os.22076.1.S1_a_at--284--5151Chr01:36463586..36463605 (20 bp)
GCAACGATCAACGTGACTGACCTGA
LOC_Os01g62430
Os.22076.1.S1_a_at--1151--5711Chr01:36463595..36463619 (25 bp)
GACTGACCTGATCAGCTTAGGCATG
LOC_Os01g62430
Os.22076.1.S1_a_at--1021--8911Chr01:36463639..36463663 (25 bp)
TGAGCGAATCCAAGCACCGGGTCGT
LOC_Os01g62430
Os.22076.1.S1_a_at--309--7251Chr01:36463662..36463686 (25 bp)
GTCCTCGCGGACAAAACATACCACG
LOC_Os01g62430
Os.22076.1.S1_a_at--697--4451Chr01:36463702..36463726 (25 bp)
GCCTCACGTTCACGGCTTCTGCAAA
LOC_Os01g62430
Target Sequence 
GTGTTCAAGTTCCAGATCAACTCCACGGCGGCGACCGGGCAGCACAAGCTCTTTCTGCGGCTCATGGACCACGACACCTT
CTCACGGGACGACTTCCTCGGCGAAGCAACGATCAACGTGACTGACCTGATCAGCTTAGGCATGGAGCACGGCACATGGG
AGATGAGCGAATCCAAGCACCGGGTCGTCCTCGCGGACAAAACATACCACGGCGANGATCAGAGTCAGCCTCACGTTCAC
GGCTTCTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22076.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis