Browse Element(s) Details


Os.11197.2.S1_x_at

Description gb:AK105666.1
DB_XREF= gi:32990875
TID=Os.11197.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11197 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-137-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-H10, full insert sequence.
FL= gb:AK105666.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3041411/11Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g304345/11Eukaryotic aspartyl protease family protein
LOC_Os01g624201/11Triosephosphate isomerase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008152biological_processmetabolism
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
GO:0004807molecular_functiontriose-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11197.2.S1_x_at--795--4132Chr09:18533993..18534017 (25 bp)
CGCTCCATGGCGCAGTACAAGAAGG
LOC_Os09g30434
Os.11197.2.S1_x_at--618--1272Chr09:18534075..18534099 (25 bp)
AGATACCCACGGTGGAGCTGGCGTT
LOC_Os09g30434
Os.11197.2.S1_x_at--886--9932Chr09:18534143..18534167 (25 bp)
TACGTCTCCAAGGTGTCGCAGGCGT
LOC_Os09g30434
Os.11197.2.S1_x_at--731--2172Chr09:18534219..18534243 (25 bp)
ACACGCAGCAGAAGACGTTCGCCGT
LOC_Os09g30434
Os.11197.2.S1_x_at--340--1872Chr09:18534252..18534276 (25 bp)
ACGTTGCCAACCAGAGGATCGGCTT
LOC_Os09g30434
Os.11197.2.S1_x_at--1026--9452Chr09:18534276..18534300 (25 bp)
TCGGCGCCAAGGGATGCAGCTGATT
NONE
Os.11197.2.S1_x_at--478--6332Chr09:18534288..18534312 (25 bp)
GATGCAGCTGATTACAATCCGAGAT
NONE
Os.11197.2.S1_x_at--523--2712Chr09:18534392..18534416 (25 bp)
AAGCATCATCGATAGTGACATGGAA
NONE
Os.11197.2.S1_x_at--1070--1712Chr09:18534452..18534476 (25 bp)
ACCAGTTCGGGCTAGTAACAGTATT
NONE
Os.11197.2.S1_x_at--160--7052Chr09:18534466..18534490 (25 bp)
GTAACAGTATTACAGTGTGCCTGAT
NONE
Os.11197.2.S1_x_at--261--6493Chr09:18534488..18534512 (25 bp)
GATAGTAGCACATTTCAGGCTTTAT
NONE
Target Sequence 
CGCTCCATGGCGCAGTACAAGAAGGCGCCCGCGCTGTCCATCCTCGACACGTGCTACGACTTCACCGGCCACCGGACGGC
GCAGATACCCACGGTGGAGCTGGCGTTCGCCGGCGGCGCCACCGTCAGCCTCGACTTCACCGGCGTGCTCTACGTCTCCA
AGGTGTCGCAGGCGTGCCTGGCGTTCGCGCCCAACGCCGACGACTCGTCCATCGCCATCCTCGGGAACACGCAGCAGAAG
ACGTTCGCCGTCGCGTACGACGTTGCCAACCAGAGGATCGGCTTCGGCGCCAAGGGATGCAGCTGATTACAATCCGAGAT
GATGAATCAATCGATCATTTTGTTTTGTTACAGTGACATATATATGGGGAAAAAANANNNAAAAAAAANNNCAATAAATA
AGCATCATCGATAGTGACATGGAAGAAGTTGAAAACCGTTAANAATATTTTTGATGCANACCAGTTCGGGCTAGTAACAG
TATTACAGTGTGCCTGATAGTAGCACATTTCAGGCTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11197.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis