Browse Element(s) Details


Os.57460.1.S1_x_at

Description gb:D10963.1
DB_XREF= gi:218132
TID=Os.57460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57460 (NCBI UniGene Cluster)
UG_TITLE=MRNA for heat shock protein 83
DEF=Oryza sativa mRNA for heat shock protein 83.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g304388/11Heat shock protein 82, putative, expressed
LOC_Os09g304188/11Hsp90 protein
LOC_Os09g364201/11Hsp90 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0009934biological_processregulation of meristem organization
GO:0010075biological_processregulation of meristem size
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57460.1.S1_x_at--1014--8854Chr09:21015839..21015862 (24 bp)
TGATGCCATTGATGAGTACGCTGTT
LOC_Os09g36420
Os.57460.1.S1_x_at--155--1193Chr09:18536846..18536865 (20 bp)
AGTACGCTGTTGGTCAGCTTCTTGC
LOC_Os09g30438
Os.57460.1.S1_x_at--841--1552Chr09:18536823..18536847 (25 bp)
AGCTTCTTGCCTTCAAACTCCTTAA
NONE
Os.57460.1.S1_x_at--328--1473Chr09:18536670..18536694 (25 bp)
AGAAGGTTGTTGTCTCTGACCGTGT
LOC_Os09g30438
Os.57460.1.S1_x_at--559--3853Chr09:18536655..18536679 (25 bp)
CTGACCGTGTGGTGGACTCTCCCTG
LOC_Os09g30438
Os.57460.1.S1_x_at--369--1193Chr09:18536613..18536637 (25 bp)
AGTATGGCTGGACTGCTAACATGGA
LOC_Os09g30438
Os.57460.1.S1_x_at--32--6173Chr09:18536588..18536612 (25 bp)
GAGGATCATGAAGGCCCAGGCTCTG
LOC_Os09g30438
Os.57460.1.S1_x_at--904--3392Chr09:18536555..18536579 (25 bp)
CAGCATGGCCGGCTACATGTCTAGC
LOC_Os09g30438
Os.57460.1.S1_x_at--1104--5773Chr09:18536491..18536515 (25 bp)
GACGAGCTCCGCAAGCGTGCCGATG
LOC_Os09g30438
Os.57460.1.S1_x_at--284--10451NONE
TTACAAGTCCGTAAAGACCTTGGTG
NONE
Os.57460.1.S1_x_at--1158--2751NONE
AAGACCTTGGTGATTCTGCTTTTCG
NONE
Target Sequence 
TGATGCCATTGATGAGTACGCTGTTGGTCAGCTTCTTGCCTTCAAACTCCTTAAGCTTGATGAGAGTGAGGACGAGAAGA
AGCGGCAGGAGGAACTCAAGGAGAAGTTCGAGGGTCTGTGCAAGGTGATCAAGGAGGTGCTCGGTGACAAGGTGGAGAAG
GTTGTTGTCTCTGACCGTGTGGTGGACTCTCCCTGCTGTCTAGTCACTGGGGAGTATGGCTGGACTGCTAACATGGAGAG
GATCATGAAGGCCCAGGCTCTGAGNGACTCCAGCATGGCCGGCTACATGTCTAGCAAGAAGACCATGGAGATCAACCCGG
AGAATGCCATCATGGACGAGCTCCGCAAGCGTGCCGATGCGGACAAGNTTACAAGTCCGTAAAGACCTTGGTGATTCTGC
TTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57460.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis