Browse Element(s) Details


OsAffx.30101.1.S1_s_at

Description tigr:9637.m02725
TID=OsAffx.30101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=antifreeze-like protein (af70) - Norway spruce
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3045811/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478Os.17123.1.S1_at11/119+18575971..18580276expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0010102biological_processlateral root morphogenesis
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30101.1.S1_s_at--154--9951Chr09:18557945..18557969 (25 bp)
TACGACGCGTCCCAGATCAAGCTGG
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--694--4651Chr09:18557939..18557963 (25 bp)
GCGTCCCAGATCAAGCTGGTCGCCG
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--34--3411Chr09:18557756..18557780 (25 bp)
CAGCAGGAGGCGACCTACACCGTCG
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--843--5751Chr09:18557708..18557732 (25 bp)
GACGTGAAGGTGGTGCCCGGCAAGC
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--448--9171Chr09:18557695..18557719 (25 bp)
TGCCCGGCAAGCTGGAGTTCACTAA
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--445--5171Chr09:18557689..18557713 (25 bp)
GCAAGCTGGAGTTCACTAAGAGCGT
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--782--2771Chr09:18557672..18557696 (25 bp)
AAGAGCGTGAAGAAGCTGGGTTTCC
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--309--1451Chr09:18557662..18557686 (25 bp)
AGAAGCTGGGTTTCCAGGTGTCCTT
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--546--1031Chr09:18557647..18557671 (25 bp)
AGGTGTCCTTCTCCGGCAAGAACGC
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--707--4251Chr09:18557601..18557625 (25 bp)
CCTGTTTGGGTCAATAACGTGGTCG
LOC_Os09g30458
OsAffx.30101.1.S1_s_at--1001--2571Chr09:18557586..18557610 (25 bp)
AACGTGGTCGGATGGAAAGCATACA
LOC_Os09g30458
Target Sequence 
TACGACGCGTCCCAGATCAAGCTGGTCGCCGCCTCCCTCCCCGGCGGCTTCAGCTGCGGCGCCGGCGGCAACGCCAGCGA
CAGCAAGGACCTCATCTCCGGCCTCAACTACCCGTCGATCGCCGTCACGGGGCTCGGCAAGGCCGGCGGCACCAGGACGG
TGAGCCGCGTCGTCACCAACGTCGGCGCGCAGCAGGAGGCGACCTACACCGTCGCCGTCGCGGCGCCGGCCGGCCTGGAC
GTGAAGGTGGTGCCCGGCAAGCTGGAGTTCACTAAGAGCGTGAAGAAGCTGGGTTTCCAGGTGTCCTTCTCCGGCAAGAA
CGCCGCGGCGGCGGCCAAAGGGGACCTGTTTGGGTCAATAACGTGGTCGGATGGAAAGCATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30101.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis