Browse Element(s) Details


OsAffx.30100.1.S1_at

Description tigr:9637.m02722
TID=OsAffx.30100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3044211/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30414OsAffx.6453.1.S1_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414Os.11197.2.S1_x_at11/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414OsAffx.14464.1.S1_x_at1/119+18520579..18523671Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418Os.28300.2.S2_s_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S1_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.28300.2.S2_a_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.22573.1.S1_x_at11/119+18523286..18528649Hsp90 protein
LOC_Os09g30418Os.57460.1.S1_x_at8/119+18523286..18528649Hsp90 protein
LOC_Os09g30434Os.11197.2.S1_x_at5/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30434OsAffx.14464.1.S1_x_at1/119+18532125..18534298Eukaryotic aspartyl protease family protein
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30100.1.S1_at--286--871Chr09:18541194..18541218 (25 bp)
ATGGCGCACTCACAAAGCATGTCAT
LOC_Os09g30442
OsAffx.30100.1.S1_at--222--7131Chr09:18541214..18541238 (25 bp)
GTCATGCCTGCCCAAGATGGCAAGA
LOC_Os09g30442
OsAffx.30100.1.S1_at--627--2791Chr09:18541227..18541251 (25 bp)
AAGATGGCAAGATCGACACCGTGGC
LOC_Os09g30442
OsAffx.30100.1.S1_at--340--5171Chr09:18541233..18541257 (25 bp)
GCAAGATCGACACCGTGGCGACGCT
LOC_Os09g30442
OsAffx.30100.1.S1_at--343--4611Chr09:18541250..18541274 (25 bp)
GCGACGCTGAACGACCTAAGCATGC
LOC_Os09g30442
OsAffx.30100.1.S1_at--687--5451Chr09:18541258..18541282 (25 bp)
GAACGACCTAAGCATGCTGGACATG
LOC_Os09g30442
OsAffx.30100.1.S1_at--1058--5871Chr09:18541303..18541327 (25 bp)
GAGCGGGCACTGGTGGTTCGTGGGA
LOC_Os09g30442
OsAffx.30100.1.S1_at--667--1051Chr09:18541327..18541351 (25 bp)
AGGTGGTCCACTGGTACCTCATGCA
LOC_Os09g30442
OsAffx.30100.1.S1_at--637--8591Chr09:18541338..18541362 (25 bp)
TGGTACCTCATGCAGATGGGCTCGT
LOC_Os09g30442
OsAffx.30100.1.S1_at--435--651Chr09:18541347..18541371 (25 bp)
ATGCAGATGGGCTCGTCGGCTGCCA
LOC_Os09g30442
OsAffx.30100.1.S1_at--921--9491Chr09:18541378..18541402 (25 bp)
TCTCCGCCGGCAAGCTGCGAGGGAA
LOC_Os09g30442
Target Sequence 
ATGGCGCACTCACAAAGCATGTCATGCCTGCCCAAGATGGCAAGATCGACACCGTGGCGACGCTGAACGACCTAAGCATG
CTGGACATGCAGGTGATGGCGGAGGAGAAGAGCGGGCACTGGTGGTTCGTGGGAGGTGGTCCACTGGTACCTCATGCAGA
TGGGCTCGTCGGCTGCCAGCCCTCTCTCCGCCGGCAAGCTGCGAGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis