Browse Element(s) Details


OsAffx.6454.1.S1_at

Description tigr:9637.m02726
TID=OsAffx.6454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3046211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30438Os.28300.2.S2_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.22573.1.S1_x_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S2_s_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.28300.2.S1_a_at11/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30438Os.57460.1.S1_x_at8/119+18534745..18540200Heat shock protein 82, putative, expressed
LOC_Os09g30442OsAffx.30100.1.S1_at11/119+18541175..18541541hypothetical protein
LOC_Os09g30446OsAffx.17968.1.S1_at11/119+18542825..18547989Sodium/hydrogen exchanger family protein
LOC_Os09g30454Os.53728.1.S1_at11/119+18549670..18552850wall-associated kinase-like 1, putative, expressed
LOC_Os09g30458OsAffx.30101.1.S1_s_at11/119+18557470..18562756Subtilisin N-terminal Region family protein, expressed
LOC_Os09g30462OsAffx.6454.1.S1_at11/119+18563937..18564736expressed protein
LOC_Os09g30466Os.13862.1.S1_at10/119+18565011..18568120RNase Z, putative, expressed
LOC_Os09g30474OsAffx.6455.1.S1_at11/119+18568420..18572820LBP/BPI/CETP family, C-terminal domain containing protein, expressed
LOC_Os09g30478Os.17123.1.S1_at11/119+18575971..18580276expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6454.1.S1_at--618--10671Chr09:18564143..18564167 (25 bp)
TTGCCCAATTAACCCGGATTGTTCT
LOC_Os09g30462
OsAffx.6454.1.S1_at--597--351Chr09:18564175..18564199 (25 bp)
ATAATTCTCCTAACATCCGGGACAG
LOC_Os09g30462
OsAffx.6454.1.S1_at--415--4911Chr09:18564199..18564223 (25 bp)
GCTTCTCCATCGATAGAATCTCTAT
LOC_Os09g30462
OsAffx.6454.1.S1_at--688--8051Chr09:18564244..18564268 (25 bp)
GGAGAGTTAGCTTCAGATTACCTGA
LOC_Os09g30462
OsAffx.6454.1.S1_at--565--3831Chr09:18564274..18564298 (25 bp)
CTGACATATTCATCATTCCCGCACG
LOC_Os09g30462
OsAffx.6454.1.S1_at--853--10651Chr09:18564289..18564313 (25 bp)
TTCCCGCACGCGAAGATCCTGAAAG
LOC_Os09g30462
OsAffx.6454.1.S1_at--818--6371Chr09:18564303..18564327 (25 bp)
GATCCTGAAAGTTGCTCCACTGATG
LOC_Os09g30462
OsAffx.6454.1.S1_at--757--3331Chr09:18564411..18564435 (25 bp)
CACTGCTCTCATGTACCTAGCAAAA
LOC_Os09g30462
OsAffx.6454.1.S1_at--835--3111Chr09:18564514..18564538 (25 bp)
AATATTAGTGTGTGCCTGCTTGGGT
LOC_Os09g30462
OsAffx.6454.1.S1_at--345--10851Chr09:18564533..18564557 (25 bp)
TTGGGTGCTTGTTGCTTCTCAAGGA
LOC_Os09g30462
OsAffx.6454.1.S1_at--1130--1451Chr09:18564642..18564666 (25 bp)
AGAAGTGTATGCCTGCTTGTTGCTT
LOC_Os09g30462
Target Sequence 
TTGCCCAATTAACCCGGATTGTTCTTATGAAAATAATTCTCCTAACATCCGGGACAGCTTCTCCATCGATAGAATCTCTA
TTAGGAGCCAAAACAGCATGAGGAGAGTTAGCTTCAGATTACCTGATGAATCTGACATATTCATCATTCCCGCACGCGAA
GATCCTGAAAGTTGCTCCACTGATGACGAATCTGTTGAACATGTAAGTGAACAAGACATTGATGCAAGGAAAATCCGTTA
TGCTAAAACCAGATACTAGCAGCACTGCCACTGCTCTCATGTACCTAGCAAAAAAGAATACAAGAAAAGAAGCTTCAAAG
AACAAACTCATTGGTTGATCTATTCCAAAGAAGATACTCATGTTATGCAGTAATATTAGTGTGTGCCTGCTTGGGTGCTT
GTTGCTTCTCAAGGATTATACTGTACGACACTTCAGAACAAACTCGTAACTTATCTATTTTTCAAGAGAACGTACTCATG
GTACGCAGTACACAGTAATAGAAGTGTATGCCTGCTTGTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis