Browse Element(s) Details

Os.20028.1.S1_at

Description

gb:AF459793.1
DB_XREF= gi:23305050
GEN=WRKY
TID=Os.20028.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.20028 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) WRKY transcription factor (WRKY) mRNA, complete cds.
PROD=WRKY transcription factor
FL= gb:AF459793.1 gb:AK103745.1 gb:AK065078.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g30400	11/11	WRKY DNA binding domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g30350	Os.19234.1.S1_s_at	11/11	9	+	18469577..18472895	expressed protein
LOC_Os09g30350	Os.22948.1.S1_s_at	11/11	9	+	18469577..18472895	expressed protein
LOC_Os09g30360	Os.4830.1.S1_at	11/11	9	+	18474032..18475380	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360	Os.4830.1.S1_x_at	10/11	9	+	18474032..18475380	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370	Os.35344.18.S1_x_at	11/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30370	Os.35344.3.S1_x_at	9/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30370	OsAffx.22940.5.S1_x_at	3/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30380	Os.47322.1.A1_at	11/11	9	+	18490725..18493878	expressed protein
LOC_Os09g30390	OsAffx.6452.1.S1_at	11/11	9	+	18494825..18495403	hypothetical protein
LOC_Os09g30400	Os.20028.1.S1_at	11/11	9	+	18495951..18500217	WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410	Os.51374.1.S1_at	10/11	9	+	18507898..18509774	expressed protein
LOC_Os09g30414	OsAffx.6453.1.S1_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	Os.11197.2.S1_x_at	11/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30414	OsAffx.14464.1.S1_x_at	1/11	9	+	18520579..18523671	Eukaryotic aspartyl protease family protein, expressed
LOC_Os09g30418	Os.28300.2.S2_s_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S1_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.28300.2.S2_a_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.22573.1.S1_x_at	11/11	9	+	18523286..18528649	Hsp90 protein
LOC_Os09g30418	Os.57460.1.S1_x_at	8/11	9	+	18523286..18528649	Hsp90 protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006355	biological_process	regulation of transcription, DNA-dependent
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.20028.1.S1_at--400--325	1	Chr09:18496526..18496550 (25 bp)	CAAGCCAGCTTCAGCCAGTTTGGTG	LOC_Os09g30400
Os.20028.1.S1_at--186--671	1	Chr09:18496478..18496502 (25 bp)	GTTCTCCCACCAAGAAACCAATTTG	LOC_Os09g30400
Os.20028.1.S1_at--952--235	1	Chr09:18496464..18496488 (25 bp)	AAACCAATTTGGACCATCGGCGAGC	LOC_Os09g30400
Os.20028.1.S1_at--940--595	1	Chr09:18496443..18496467 (25 bp)	GAGCAATTTCCCCTTTGGGATGGTC	LOC_Os09g30400
Os.20028.1.S1_at--581--1007	1	Chr09:18496387..18496411 (25 bp)	TAGGGTCTCTTGCTCCAGCAAAGAT	LOC_Os09g30400
Os.20028.1.S1_at--865--233	1	Chr09:18496368..18496392 (25 bp)	AAAGATGGCTGGTCATCCATCCACC	LOC_Os09g30400
Os.20028.1.S1_at--1073--43	1	Chr09:18496257..18496281 (25 bp)	ATCTTCATCATCCTTCCAACAGATG	LOC_Os09g30400
Os.20028.1.S1_at--377--631	1	Chr09:18496233..18496257 (25 bp)	GATGAACAGGCCTCCATCATTTGGA	LOC_Os09g30400
Os.20028.1.S1_at--751--869	1	Chr09:18496161..18496185 (25 bp)	TGTGCTTCAGCTTCTATACATGGTA	LOC_Os09g30400
Os.20028.1.S1_at--652--663	1	Chr09:18496115..18496139 (25 bp)	GTTGTTCTAGCTTTTACCTGTTATT	LOC_Os09g30400
Os.20028.1.S1_at--1090--503	1	Chr09:18496054..18496078 (25 bp)	GCAGAAGATGTTACCCGTTTTGTTT	LOC_Os09g30400

Target Sequence

CAAGCCAGCTTCAGCCAGTTTGGTGGCGCGGCTCCCTTCAGCTCCTTCGTTCTCCCACCAAGAAACCAATTTGGACCATC
GGCGAGCAATTTCCCCTTTGGGATGGTCCCGCCAGGCATGGCGATTCCCATGCCATCTNCTAGGGTCTCTTGCTCCAGCA
AAGATGGCTGGTCATCCATCCACCATGCAGGGCTACCAGGGGCTCATGATTCCGGAAGGAGAGATGAAGACAGAGCCCAT
GTCGCAGCTCGGCTTCCCCGCGGTAAACCAATCTTCATCATCCTTCCAACAGATGATGAACAGGCCTCCATCATTTGGAC
CTCAGATGTAAATAATAATATTAAAGAAAGAAAAGAAAATGATAGATGTGCTTCAGCTTCTATACATGGTAGCAATGCTA
CAACATAGCTTTGTTGTTCTAGCTTTTACCTGTTATTTTTTCTTTGGGCTTTTATTTTTTGGAAGCAAAGAATGCAGAAG
ATGTTACCCGTTTTGTTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis