Browse Element(s) Details

Os.22948.1.S1_s_at

Description

gb:CA754590
DB_XREF= gi:25798629
DB_XREF=BR030002000_PLATE_D09_68_077.ab1
CLONE=BR030002000_PLATE_D09_68_077.ab1
TID=Os.22948.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.22948 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g30350	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g30290	OsAffx.6450.1.S1_at	11/11	9	+	18444817..18445203	hypothetical protein
LOC_Os09g30300	NA	NA	9	+	18447444..18447716	expressed protein
LOC_Os09g30310	Os.54433.1.A1_at	11/11	9	+	18450611..18451707	Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310	OsAffx.30098.1.S1_at	1/11	9	+	18450611..18451707	Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320	Os.56088.1.S1_at	11/11	9	+	18455855..18457651	BURP domain containing protein, expressed
LOC_Os09g30320	Os.5682.1.S1_at	11/11	9	+	18455855..18457651	BURP domain containing protein, expressed
LOC_Os09g30320	OsAffx.30099.1.S1_at	4/11	9	+	18455855..18457651	BURP domain containing protein, expressed
LOC_Os09g30330	Os.51728.1.S1_at	11/11	9	+	18463264..18468033	CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340	Os.12127.2.S1_x_at	7/11	9	+	18468726..18469492	Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340	Os.12127.1.S1_at	6/11	9	+	18468726..18469492	Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350	Os.19234.1.S1_s_at	11/11	9	+	18469577..18472895	expressed protein
LOC_Os09g30350	Os.22948.1.S1_s_at	11/11	9	+	18469577..18472895	expressed protein
LOC_Os09g30360	Os.4830.1.S1_at	11/11	9	+	18474032..18475380	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360	Os.4830.1.S1_x_at	10/11	9	+	18474032..18475380	Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370	Os.35344.18.S1_x_at	11/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30370	Os.35344.3.S1_x_at	9/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30370	OsAffx.22940.5.S1_x_at	3/11	9	+	18477739..18483786	transposon protein, putative, Mutator sub-class
LOC_Os09g30380	Os.47322.1.A1_at	11/11	9	+	18490725..18493878	expressed protein
LOC_Os09g30390	OsAffx.6452.1.S1_at	11/11	9	+	18494825..18495403	hypothetical protein
LOC_Os09g30400	Os.20028.1.S1_at	11/11	9	+	18495951..18500217	WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.22948.1.S1_s_at--815--271	1	Chr09:18470235..18470259 (25 bp)	AAGCAGCATGTTCTATGCAATACCG	LOC_Os09g30350
Os.22948.1.S1_s_at--1--351	1	Chr09:18470229..18470253 (25 bp)	CATGTTCTATGCAATACCGAGCTGC	LOC_Os09g30350
Os.22948.1.S1_s_at--394--951	1	Chr09:18470202..18470226 (25 bp)	TCTCTGCAATCTGATATGGATCAAC	LOC_Os09g30350
Os.22948.1.S1_s_at--456--1011	1	Chr09:18470188..18470212 (25 bp)	TATGGATCAACTGTTCCTGGAGAAG	LOC_Os09g30350
Os.22948.1.S1_s_at--1060--135	1	Chr09:18470155..18470179 (25 bp)	AGAGACTCAATGCTTCATCCTGACA	LOC_Os09g30350
Os.22948.1.S1_s_at--39--57	1	Chr09:18470139..18470163 (25 bp)	ATCCTGACAAGAGCATCGCAAGCTT	LOC_Os09g30350
Os.22948.1.S1_s_at--6--499	1	Chr09:18470127..18470151 (25 bp)	GCATCGCAAGCTTGGAATCCCCTGA	LOC_Os09g30350
Os.22948.1.S1_s_at--798--525	1	Chr09:18470113..18470137 (25 bp)	GAATCCCCTGACTGAGGATCAAGCT	LOC_Os09g30350
Os.22948.1.S1_s_at--1060--795	1	Chr09:18470098..18470122 (25 bp)	GGATCAAGCTGCTATTTTTGACATT	LOC_Os09g30350
Os.22948.1.S1_s_at--1152--823	1	Chr09:18470027..18470051 (25 bp)	GGCACACCGAGAACAGGGCACTGAT	LOC_Os09g30350
Os.22948.1.S1_s_at--406--93	1	Chr09:18469976..18470000 (25 bp)	AGGCACAGTGCAAAGATCTTGCTAG	LOC_Os09g30350

Target Sequence

AAGCAGCATGTTCTATGCAATACCGAGCTGCTGTCTCTGCAATCTGATATGGATCAACTGTTCCTGGAGAAGATGGAAGC
AGAGACTCAATGCTTCATCCTGACAAGAGCATCGCAAGCTTGGAATCCCCTGACTGAGGATCAAGCTGCTATTTTTGACA
TTCAGAAATCTNTACCTGAGGATCACAAACAGCTTGAAGCTAAGNTACGGCACACCGAGAACAGGGCACTGATGCTAGAG
GAGATGGTGGAGAAGCTAGAGGCACAGTGCAAAGATCTTGCTAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis