Browse Element(s) Details


OsAffx.6452.1.S1_at

Description tigr:9637.m02714
TID=OsAffx.6452.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3039011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein
LOC_Os09g30390OsAffx.6452.1.S1_at11/119+18494825..18495403hypothetical protein
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed
LOC_Os09g30410Os.51374.1.S1_at10/119+18507898..18509774expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6452.1.S1_at--427--1551Chr09:18494858..18494882 (25 bp)
AGCTTCAAGATGGAGGTGGGCTTCT
LOC_Os09g30390
OsAffx.6452.1.S1_at--493--8651Chr09:18494874..18494898 (25 bp)
TGGGCTTCTTCGACACCGTCCATGA
LOC_Os09g30390
OsAffx.6452.1.S1_at--852--5631Chr09:18494885..18494909 (25 bp)
GACACCGTCCATGACATCAAGCAGA
LOC_Os09g30390
OsAffx.6452.1.S1_at--1115--9711Chr09:18494901..18494925 (25 bp)
TCAAGCAGAAGCTCCAGAGCCGCAG
LOC_Os09g30390
OsAffx.6452.1.S1_at--965--3971Chr09:18494943..18494967 (25 bp)
CGGTGTCGCTGTTCCACAACGGCGA
LOC_Os09g30390
OsAffx.6452.1.S1_at--421--9931Chr09:18495020..18495044 (25 bp)
TACGGCATCGTGGAGGGCTCCGTCA
LOC_Os09g30390
OsAffx.6452.1.S1_at--820--8551Chr09:18495030..18495054 (25 bp)
TGGAGGGCTCCGTCATCCACGTCGA
LOC_Os09g30390
OsAffx.6452.1.S1_at--239--3391Chr09:18495086..18495110 (25 bp)
CAGCTGCAGCAGAACGAACACAAGG
LOC_Os09g30390
OsAffx.6452.1.S1_at--22--1451Chr09:18495096..18495120 (25 bp)
AGAACGAACACAAGGGCAGGAGCAA
LOC_Os09g30390
OsAffx.6452.1.S1_at--496--9891Chr09:18495281..18495305 (25 bp)
TACTTCTTCATCCACCGGCAGAGCG
LOC_Os09g30390
OsAffx.6452.1.S1_at--714--3991Chr09:18495304..18495328 (25 bp)
CGTGATGGACGAGTCCCGGTCGTTC
LOC_Os09g30390
Target Sequence 
AGCTTCAAGATGGAGGTGGGCTTCTTCGACACCGTCCATGACATCAAGCAGAAGCTCCAGAGCCGCAGGGGGTGGCCCGC
CGCCGCGGTGTCGCTGTTCCACAACGGCGACGCGCTGGCGGACGCTGGCGGCGGCGAGGCCGCCGGCGGCGGTGCAGAGC
GGTACGGCATCGTGGAGGGCTCCGTCATCCACGTCGAGCTCGGCGTCGGCGTCGCCGGCAGGCAGCAGCAGCTGCAGCAG
AACGAACACAAGGGCAGGAGCAAGAGGCGGGACGACGGCGGCGGCGCGGCGGCGGTGCGCGTGAACGTGGTGTCGCGGTG
CGGGCGGGGGCGGGCGGAGGTCGCGGTGGGCGCGCGGCGCGCGGTGGCGGCGCTGCGGCGGGAGCTGGAGGAGCGGGCGT
TCCCGCTGCCGCGCGACGGCGCCTACTTCTTCATCCACCGGCAGAGCGTGATGGACGAGTCCCGGTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6452.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis