Browse Element(s) Details


Os.4830.1.S1_at

Description gb:AK108479.1
DB_XREF= gi:32993688
TID=Os.4830.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4830 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F02, full insert sequence.
FL= gb:AK108479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3036011/11Caffeoyl-CoA O-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein
LOC_Os09g30390OsAffx.6452.1.S1_at11/119+18494825..18495403hypothetical protein
LOC_Os09g30400Os.20028.1.S1_at11/119+18495951..18500217WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4830.1.S1_at--905--1651Chr09:18474619..18474643 (25 bp)
AGCGCCGGTGATCGACAAGGCCGGC
LOC_Os09g30360
Os.4830.1.S1_at--978--4131Chr09:18474246..18474270 (25 bp)
CGCTCGCCAGGGAGTTCAACGCGGC
LOC_Os09g30360
Os.4830.1.S1_at--28--3811Chr09:18474244..18474268 (25 bp)
CTCGCCAGGGAGTTCAACGCGGCGA
LOC_Os09g30360
Os.4830.1.S1_at--437--6371Chr09:18474127..18474151 (25 bp)
GATCCCCTCTCCATGGATGTACTTT
LOC_Os09g30360
Os.4830.1.S1_at--205--4191Chr09:18474123..18474147 (25 bp)
CCCTCTCCATGGATGTACTTTTCAG
LOC_Os09g30360
Os.4830.1.S1_at--698--3771Chr09:18474121..18474145 (25 bp)
CTCTCCATGGATGTACTTTTCAGAA
LOC_Os09g30360
Os.4830.1.S1_at--894--3811Chr09:18474119..18474143 (25 bp)
CTCCATGGATGTACTTTTCAGAAAG
LOC_Os09g30360
Os.4830.1.S1_at--438--6991Chr09:18474109..18474133 (25 bp)
GTACTTTTCAGAAAGTGCGTTGGGT
LOC_Os09g30360
Os.4830.1.S1_at--348--4091Chr09:18474102..18474126 (25 bp)
TCAGAAAGTGCGTTGGGTAAAAGTA
LOC_Os09g30360
Os.4830.1.S1_at--986--2431Chr09:18474068..18474092 (25 bp)
AAAAGTTGCTACTACTTGGACTCTT
LOC_Os09g30360
Os.4830.1.S1_at--295--2811Chr09:18474066..18474090 (25 bp)
AAGTTGCTACTACTTGGACTCTTTT
LOC_Os09g30360
Target Sequence 
AGCGCCGGTGATCGACAAGGCCGGCGTNGCGCACAANGTCGACTTCCGCGTCGGCCTCGCCATNCCGGTNCTCGACGAGC
TCGTCGCCGAGGAGGGGAACAANGGGANGTTCGACTTCGCGTTCGTGGACNCGGACAAGGTGAACTTCCTCGGCTACCAC
NAGCGGCTGCTGCAGCTGGTCAGGGTCGGCNGCCTCATCGCCTACGACAACACGCTGTGGGGCGGCTCNGNTGGCGNGCG
CCGCCGGCGGCGGCCGACGAGGCGGTGCCGTCGGGGCGGGACCGCTCGCTCNCCGCGCTCGCCAGGGAGTTCAACGCGGC
GATCGCCGCCGACCGCCGCGTCAAGCCGTGCCAGCTCGCCATCGCCGACGGCGTCATGNTCTGCCGCCGCGTGGCCTGAC
CACCACAACACNCCGATCCCCTCTCCATGGATGTACTTTTCAGAAAGTGCGTTGGGTAAAAGTAAAAATGAATAAAAGTT
GCTACTACTTGGACTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis