Browse Element(s) Details


Os.12127.1.S1_at

Description gb:AK098847.1
DB_XREF= gi:32984056
TID=Os.12127.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000C21, full insert sequence.
FL= gb:AK061695.1 gb:AK098847.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g303406/11Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30380Os.47322.1.A1_at11/119+18490725..18493878expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12127.1.S1_at--762--8611Chr09:18468941..18468965 (25 bp)
TGGTGATCAGCCTGAGCACCGGCGT
LOC_Os09g30340
Os.12127.1.S1_at--1144--7411Chr09:18468988..18469012 (25 bp)
GTGTTCTTCAACTTCCAGCGGGAGA
LOC_Os09g30340
Os.12127.1.S1_at--622--3651Chr09:18468993..18469017 (25 bp)
CTTCAACTTCCAGCGGGAGAACGTG
LOC_Os09g30340
Os.12127.1.S1_at--993--10131Chr09:18469396..18469420 (25 bp)
TATGCTCATGTATCAGTTACTTTCA
LOC_Os09g30340
Os.12127.1.S1_at--177--9631Chr09:18469401..18469425 (25 bp)
TCATGTATCAGTTACTTTCAGAGTT
LOC_Os09g30340
Os.12127.1.S1_at--624--6831NONE
GTTTCAGACTTGGTATGTGTGGCAC
NONE
Os.12127.1.S1_at--225--1411NONE
AGACTTGGTATGTGTGGCACTGGCA
NONE
Os.12127.1.S1_at--1045--8651Chr09:18469440..18469464 (25 bp)
TGTGGCACTGGCACTTACCCAGAAA
LOC_Os09g30340
Os.12127.1.S1_at--163--10451NONE
TTACCCAGAAACTCAATTCCCAGTG
NONE
Os.12127.1.S1_at--335--1431NONE
AGAAACTCAATTCCCAGTGCTCCAT
NONE
Os.12127.1.S1_at--9--3191NONE
CAATTCCCAGTGCTCCATGATTCAT
NONE
Target Sequence 
TGGTGATCAGCCTGAGCACCGGCGTCTCCCTGTTCCTGGGGCGGTTCGTGTTCTTCAACTTCCAGCGGGAGAACGTGGCG
AAGCAGGTGCCGGAGCAGAACGGCAAGACGCACTTCGACGCCGGCGACGAGCGCGCCAAGGAGTTCGCCGGCCTGCTCCG
GTCCAACGACCCCGTCGGCTTCAACCTCGTCGACGTCCTCGCCTGGGGCTCCCTCGGCCACATCGTCGCCTACTACATCC
TCGCCACCTGCAGCAACGGATACAACCCAAACTTCTTCTGATCATTCTCATCTTGGATGGATGCAATGTAATCTGAATGG
ATCTCTGGTGTTTCTACGTGATTATGTATGAGATGGGTAAAAAAGAAAAGAAAAAAGGTTGATTAATTTGGAACAGTAGT
GCAATCGCGTGTGTATATTGGCCNGCATGAAATTTGTCAGTTTGATGATCTTTCTCTATGCTCATGTATCAGTTACTTTC
AGAGTTTCAGACTTGGTATGTGTGGCACTGGCACTTACCCAGAAACTCAATTCCCAGTGCTCCATGATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis