Browse Element(s) Details


OsAffx.30099.1.S1_at

Description tigr:9637.m02708
TID=OsAffx.30099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anther-specific protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g303204/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30370Os.35344.18.S1_x_at11/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370Os.35344.3.S1_x_at9/119+18477739..18483786transposon protein, putative, Mutator sub-class
LOC_Os09g30370OsAffx.22940.5.S1_x_at3/119+18477739..18483786transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30099.1.S1_at--892--1991Chr09:18456904..18456928 (25 bp)
ACTACAGGGCCCTGCCTCGGAGCGA
LOC_Os09g30320
OsAffx.30099.1.S1_at--963--3611Chr09:18456934..18456958 (25 bp)
CTTCCCCGGATGCATTGAACCGCGT
LOC_Os09g30320
OsAffx.30099.1.S1_at--1017--7971Chr09:18456941..18456965 (25 bp)
GGATGCATTGAACCGCGTCGCCGCC
LOC_Os09g30320
OsAffx.30099.1.S1_at--494--9851Chr09:18457137..18457161 (25 bp)
TACACCGTCCGGTCGGTGAGGGCAA
LOC_Os09g30320
OsAffx.30099.1.S1_at--29--4731NONE
GCTGGGTCGGCTGGGACTCCCTTAT
NONE
OsAffx.30099.1.S1_at--397--6731NONE
GTTCTTCGCCATTCCGATTTTGCGG
NONE
OsAffx.30099.1.S1_at--58--4431NONE
GCCATTCCGATTTTGCGGGTTGGGA
NONE
OsAffx.30099.1.S1_at--853--7611NONE
GGGACCCGTACGATGCCTGGCGCCT
NONE
OsAffx.30099.1.S1_at--921--591NONE
ATGCCTGGCGCCTTTTGTCTCTGCT
NONE
OsAffx.30099.1.S1_at--878--10251NONE
TTTGTCTCTGCTCGCGGCCCGACAA
NONE
OsAffx.30099.1.S1_at--613--9331NONE
TCGCGGCCCGACAAGTCCCGGTGGA
NONE
Target Sequence 
ACTACAGGGCCCTGCCTCGGAGCGACGCCCCTTCCCCGGATGCATTGAACCGCGTCGCCGCCGTACAGAACGCCGACGAG
AACGGCGTGTCCTCGCCGCCGCCGCCGCCGCCGACGGTGTTCTTCCTCGAGGACGCCGTGCGCGTCGGCGAGAGCCTGCC
CCTACCGCGACCGGCGGCCGACGCAACCGCCGCCGGCGCAGCGGCGGCCACGGCGTTGCCGCCGCTGCGGCTGTACACCG
TCCGGTCGGTGAGGGCAATCGAGGGGTCCAGCTTCGTCGTGTGCCGCGGCGAGACCACGGCGGGCGCCGGTGTGTACGGG
TGCCGCGATGCCGTCACCTGCCCGGCGAGGGCGTACGCTGTGGACGCGGCCGGCTGGGTCGGCTGGGACTCCCTTATCGC
CGCCGTTCTTCGCCATTCCGATTTTGCGGGTTGGGACCCGTACGATGCCTGGCGCCTTTTGTCTCTGCTCGCGGCCCGAC
AAGTCCCGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis