Browse Element(s) Details


Os.54433.1.A1_at

Description gb:AK105156.1
DB_XREF= gi:32990365
TID=Os.54433.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G06, full insert sequence.
FL= gb:AK105156.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3031011/11Nuclear transcription factor Y subunit gamma, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30360Os.4830.1.S1_at11/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os09g30360Os.4830.1.S1_x_at10/119+18474032..18475380Caffeoyl-CoA O-methyltransferase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54433.1.A1_at--826--10111Chr09:18451277..18451301 (25 bp)
TATGTGCCCCAGCAGTAATGTATCT
LOC_Os09g30310
Os.54433.1.A1_at--456--751Chr09:18451294..18451318 (25 bp)
ATGTATCTGATTAACCCCTTTCAAG
LOC_Os09g30310
Os.54433.1.A1_at--875--4231Chr09:18451310..18451334 (25 bp)
CCTTTCAAGCCTTTTCTAAGCGAAG
LOC_Os09g30310
Os.54433.1.A1_at--1034--6631Chr09:18451377..18451401 (25 bp)
GTTGTTGCCGCGTAATAAGATATGT
LOC_Os09g30310
Os.54433.1.A1_at--509--6631Chr09:18451400..18451424 (25 bp)
GTTGATAATTTATGGCTTCCCCTGA
LOC_Os09g30310
Os.54433.1.A1_at--156--851Chr09:18451411..18451435 (25 bp)
ATGGCTTCCCCTGAGCTTAAAGAAT
LOC_Os09g30310
Os.54433.1.A1_at--247--10271Chr09:18451435..18451459 (25 bp)
TTTGAGCTTTTGGTTCTAGAATCTG
LOC_Os09g30310
Os.54433.1.A1_at--700--3871Chr09:18451493..18451517 (25 bp)
CTGTATTTGTAGTGCATGTCTTAAC
LOC_Os09g30310
Os.54433.1.A1_at--481--10111Chr09:18451546..18451570 (25 bp)
TATGCGGTTAGCTGGTTACCTCTCA
LOC_Os09g30310
Os.54433.1.A1_at--420--7891Chr09:18451559..18451583 (25 bp)
GGTTACCTCTCATGATTACTGTGCT
LOC_Os09g30310
Os.54433.1.A1_at--255--151Chr09:18451573..18451597 (25 bp)
ATTACTGTGCTCATGTGCTGTGCAA
LOC_Os09g30310
Target Sequence 
TATGTGCCCCAGCAGTAATGTATCTGATTAACCCCTTTCAAGCCTTTTCTAAGCGAAGGATGTGTTGTTGTTTGTTGTTG
CTGTTGCTGTTCTTGTTGTTGTTGTTGCCGCGTAATAAGATATGTTGATAATTTATGGCTTCCCCTGAGCTTAAAGAATT
TGAGCTTTTGGTTCTAGAATCTGGGTAAAATTGTTGTAATGGGGAAGACTGTATGACTGTATTTGTAGTGCATGTCTTAA
CTTGTCGGATAGTGTAATCCGATAATTATTATGCGGTTAGCTGGTTACCTCTCATGATTACTGTGCTCATGTGCTGTGCA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54433.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis